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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22701-22750 / 86044 show all
gduggal-snapvardSNPtiHG002compoundhethomalt
89.4254
81.9989
98.3311
34.6481
6063133150678663
73.2558
gduggal-snapfbSNPtvfunc_cds*
99.4084
99.9542
98.8685
34.6495
436924369500
0.0000
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1428
99.3625
98.9241
34.6525
67024364367024
34.2857
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.6549
443044322
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6886
93.6983
99.8760
34.6569
2379160241633
100.0000
anovak-vgINDELI1_5func_cds*
77.5623
77.7778
77.3481
34.6570
140401404129
70.7317
hfeng-pmm2INDELI1_5func_cds*
99.4460
99.4444
99.4475
34.6570
179118010
0.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
ckim-isaacINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
84.1772
73.3974
98.6684
34.6801
229083022973121
67.7419
rpoplin-dv42SNPtiHG002complexvarhetalt
99.0385
99.5169
98.5646
34.6875
206120633
100.0000
raldana-dualsentieonINDELD6_15HG002compoundhet*
93.9555
91.8392
96.1717
34.6920
82947378290330328
99.3939
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7231
93.7001
99.9475
34.6971
131488841333776
85.7143
gduggal-bwaplatSNPtiHG002compoundhethomalt
96.4038
94.2115
98.7006
34.6979
696642869129182
90.1099
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2764
99.1329
99.4203
34.7086
17151517151010
100.0000
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.9099
89.5234
98.7484
34.7140
227326622882928
96.5517
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.7199
39861398600
anovak-vgSNP*func_cdshet
98.2393
97.5540
98.9342
34.7247
108882731086111770
59.8291
hfeng-pmm3SNP*HG002compoundhethomalt
99.8980
99.8887
99.9072
34.7339
1077012107701010
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
85.5129
76.5088
96.9190
34.7374
365111213649116114
98.2759
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6415
99.7240
99.5592
34.7388
72272072273232
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.7458
13092130900
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6756
99.9350
99.4176
34.7502
461334609272
7.4074
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
59.1835
45.3355
85.2120
34.7503
277334824143142
99.3007
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1822
92.7531
99.8747
34.7506
2355184239133
100.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.7507
443044322
100.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
94.6365
93.5989
95.6973
34.7531
658456452924
82.7586
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
25.9640
21.0884
33.7719
34.7639
155580154302292
96.6887
qzeng-customINDELI1_5func_cds*
99.1720
99.4444
98.9011
34.7670
179118020
0.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
89.2216
80.9904
99.3151
34.7798
1014238101577
100.0000
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
60.8295
43.7086
100.0000
34.7826
66857500
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
92.8571
100.0000
86.6667
34.7826
1301321
50.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8855
99.7712
100.0000
34.7956
13083130800
rpoplin-dv42INDELD6_15HG002compoundhet*
94.2413
93.2455
95.2586
34.8015
84216108418419413
98.5680
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
91.6049
84.5103
100.0000
34.8074
3716845700
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.8222
97.8503
97.7942
34.8099
66001456606149125
83.8926
cchapple-customINDELI6_15HG002compoundhet*
95.3148
93.5278
97.1715
34.8185
82085689894288283
98.2639
raldana-dualsentieonSNP*HG002compoundhethomalt
99.8887
99.8609
99.9165
34.8192
10767151076898
88.8889
dgrover-gatkSNP*HG002compoundhethomalt
99.8980
99.9165
99.8794
34.8304
107739107681312
92.3077
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
76.3332
62.1432
98.9213
34.8317
6901420465117164
90.1408
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.6940
99.3898
100.0000
34.8326
13038130400
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
21.0909
34.8341
0158217181
83.4101
ghariani-varprowlSNP*func_cdshet
99.3937
99.8746
98.9174
34.8349
1114714111471222
1.6393
ltrigg-rtg1INDELD1_5func_cdshet
98.8304
98.8235
98.8372
34.8485
8418510
0.0000
astatham-gatkSNP*HG002compoundhethomalt
99.8748
99.8702
99.8794
34.8528
1076814107631312
92.3077
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
87.2551
77.6765
99.5283
34.8694
3419842222
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.1496
91.6793
98.8930
34.8700
242422029483331
93.9394
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2388
86.5886
98.6779
34.8864
7244112272409780
82.4742