PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22651-22700 / 86044 show all | |||||||||||||||
ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5495 | 99.7743 | 99.3258 | 34.4624 | 442 | 1 | 442 | 3 | 3 | 100.0000 | |
dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.4624 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1980 | 95.1981 | 99.2838 | 34.4662 | 10884 | 549 | 10951 | 79 | 11 | 13.9241 | |
jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.8728 | 98.0831 | 99.6753 | 34.4681 | 307 | 6 | 307 | 1 | 1 | 100.0000 | |
asubramanian-gatk | SNP | * | func_cds | het | 99.5968 | 99.6147 | 99.5789 | 34.4684 | 11118 | 43 | 11115 | 47 | 1 | 2.1277 | |
gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 86.1756 | 76.2974 | 98.9919 | 34.4782 | 985 | 306 | 491 | 5 | 5 | 100.0000 | |
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.7959 | 81.9876 | 99.2481 | 34.4828 | 132 | 29 | 132 | 1 | 1 | 100.0000 | |
ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5591 | 99.1221 | 100.0000 | 34.4828 | 3952 | 35 | 3952 | 0 | 0 | ||
eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 44.3448 | 92.6829 | 29.1447 | 34.4863 | 456 | 36 | 552 | 1342 | 1201 | 89.4933 | |
gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.8504 | 88.1608 | 98.0670 | 34.4871 | 3552 | 477 | 1522 | 30 | 30 | 100.0000 | |
hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6962 | 93.6431 | 99.9550 | 34.4875 | 13140 | 892 | 13333 | 6 | 5 | 83.3333 | |
mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.0813 | 77.1186 | 100.0000 | 34.4884 | 728 | 216 | 794 | 0 | 0 | ||
eyeh-varpipe | INDEL | I6_15 | * | homalt | 77.6886 | 84.0359 | 72.2329 | 34.4939 | 5243 | 996 | 5273 | 2027 | 2012 | 99.2600 | |
gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 71.4799 | 62.8596 | 82.8402 | 34.4961 | 743 | 439 | 140 | 29 | 29 | 100.0000 | |
gduggal-bwavard | SNP | * | func_cds | het | 99.2091 | 99.0055 | 99.4135 | 34.5015 | 11050 | 111 | 11018 | 65 | 23 | 35.3846 | |
ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7692 | 97.9625 | 99.5893 | 34.5018 | 24040 | 500 | 24005 | 99 | 66 | 66.6667 | |
raldana-dualsentieon | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 34.5048 | 205 | 2 | 205 | 0 | 0 | ||
jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6464 | 84.7380 | 99.7812 | 34.5272 | 372 | 67 | 456 | 1 | 1 | 100.0000 | |
hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 34.5327 | 1310 | 1 | 1310 | 0 | 0 | ||
eyeh-varpipe | SNP | tv | func_cds | het | 91.6856 | 99.9624 | 84.6746 | 34.5435 | 2656 | 1 | 2641 | 478 | 0 | 0.0000 | |
gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 76.0659 | 65.5275 | 90.6435 | 34.5437 | 2416 | 1271 | 2451 | 253 | 251 | 99.2095 | |
ckim-isaac | SNP | ti | tech_badpromoters | * | 91.7197 | 84.7059 | 100.0000 | 34.5455 | 72 | 13 | 72 | 0 | 0 | ||
gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.4894 | 61.2085 | 91.9355 | 34.5468 | 1013 | 642 | 1653 | 145 | 143 | 98.6207 | |
gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.0586 | 77.6471 | 89.2809 | 34.5471 | 660 | 190 | 658 | 79 | 79 | 100.0000 | |
bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.5500 | 1309 | 2 | 1309 | 0 | 0 | ||
ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7706 | 99.5423 | 100.0000 | 34.5537 | 1305 | 6 | 1305 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8400 | 99.6805 | 100.0000 | 34.5560 | 312 | 1 | 339 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.2448 | 63.4300 | 98.7526 | 34.5578 | 503 | 290 | 475 | 6 | 4 | 66.6667 | |
cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.4742 | 68.8666 | 91.1972 | 34.5622 | 480 | 217 | 518 | 50 | 47 | 94.0000 | |
asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3228 | 99.3228 | 99.3228 | 34.5643 | 440 | 3 | 440 | 3 | 3 | 100.0000 | |
astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7323 | 99.4661 | 100.0000 | 34.5710 | 1304 | 7 | 1304 | 0 | 0 | ||
gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 78.4796 | 67.4314 | 93.8575 | 34.5759 | 2998 | 1448 | 8022 | 525 | 510 | 97.1429 | |
egarrison-hhga | SNP | ti | HG002compoundhet | * | 99.0004 | 98.5925 | 99.4116 | 34.5800 | 17232 | 246 | 17233 | 102 | 75 | 73.5294 | |
cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6976 | 99.7579 | 99.6374 | 34.5809 | 2472 | 6 | 2473 | 9 | 3 | 33.3333 | |
jlack-gatk | SNP | * | HG002compoundhet | homalt | 99.8516 | 99.8516 | 99.8515 | 34.5857 | 10766 | 16 | 10761 | 16 | 15 | 93.7500 | |
hfeng-pmm3 | SNP | ti | HG002compoundhet | * | 98.2879 | 96.7330 | 99.8937 | 34.5867 | 16907 | 571 | 16909 | 18 | 8 | 44.4444 | |
qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6334 | 99.4522 | 99.8153 | 34.5977 | 2723 | 15 | 2702 | 5 | 4 | 80.0000 | |
raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.9357 | 90.3933 | 99.9588 | 34.5998 | 2390 | 254 | 2426 | 1 | 1 | 100.0000 | |
gduggal-snapvard | INDEL | I1_5 | func_cds | * | 92.6851 | 92.7778 | 92.5926 | 34.6021 | 167 | 13 | 175 | 14 | 11 | 78.5714 | |
mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8710 | 72.2706 | 99.9075 | 34.6038 | 1079 | 414 | 1080 | 1 | 1 | 100.0000 | |
ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6556 | 99.3135 | 100.0000 | 34.6057 | 1302 | 9 | 1302 | 0 | 0 | ||
egarrison-hhga | INDEL | I6_15 | HG002compoundhet | * | 93.4351 | 91.3742 | 95.5910 | 34.6214 | 8019 | 757 | 8022 | 370 | 313 | 84.5946 | |
ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.8242 | 84.7922 | 97.7800 | 34.6306 | 959 | 172 | 969 | 22 | 17 | 77.2727 | |
ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8729 | 99.7825 | 99.9635 | 34.6365 | 2752 | 6 | 2741 | 1 | 1 | 100.0000 | |
jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9749 | 99.9498 | 100.0000 | 34.6400 | 3985 | 2 | 3985 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.6429 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7166 | 90.1734 | 93.3134 | 34.6469 | 1560 | 170 | 1563 | 112 | 110 | 98.2143 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.6480 | 1309 | 2 | 1309 | 0 | 0 |