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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22501-22550 / 86044 show all
gduggal-snapplatINDELI6_15HG002compoundhethetalt
53.1182
36.6874
96.2041
33.7320
31325405309212297
79.5082
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
57.0872
46.0813
75.0000
33.7450
127014861368456454
99.5614
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
84.2141
73.5864
98.4298
33.7451
95034110031615
93.7500
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6223
93.5683
99.8824
33.7490
1513104169822
100.0000
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
61.4979
50.4415
78.7620
33.7498
348534241169331533094
98.1288
ckim-vqsrSNPtifunc_cdshet
99.7473
99.8119
99.6828
33.7510
8488168486270
0.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
98.4456
96.9388
100.0000
33.7549
7602483800
ckim-isaacINDELD1_5func_cds*
99.3671
98.7421
100.0000
33.7553
157215700
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
98.5600
98.4026
98.7179
33.7580
308530844
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
hfeng-pmm1INDELD16_PLUSHG002compoundhet*
95.0512
93.1226
97.0614
33.7659
218016121806662
93.9394
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.8851
96.3010
99.5221
33.7816
7552983344
100.0000
gduggal-bwafbSNP*func_cdshet
99.3985
99.9462
98.8568
33.7832
111556111551292
1.5504
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
33.7893
13074130700
dgrover-gatkINDELD6_15*hetalt
97.1534
94.9352
99.4777
33.7944
776041478094139
95.1220
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8858
98.0576
99.7281
33.7984
146429146743
75.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4433
100.0000
98.8927
33.8067
142701429169
56.2500
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6222
93.5683
99.8821
33.8144
1513104169522
100.0000
hfeng-pmm3INDELI1_5func_cds*
99.7214
99.4444
100.0000
33.8235
179118000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5024
95.8159
99.2494
33.8300
114550119098
88.8889
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6834
94.2486
99.2472
33.8314
15249317141313
100.0000
hfeng-pmm2INDELD16_PLUSHG002compoundhet*
95.1177
93.2080
97.1073
33.8339
218215921826563
96.9231
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
81.1499
74.3504
89.3182
33.8346
354812243934747
100.0000
ltrigg-rtg1SNPtiHG002compoundhet*
98.6394
97.4883
99.8180
33.8383
17039439170033112
38.7097
anovak-vgINDELD6_15HG002compoundhet*
33.7576
27.6935
43.2221
33.8439
25016530270735562531
71.1755
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4523
93.1870
99.9548
33.8499
130769561326965
83.3333
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
36.6612
27.4933
55.0021
33.8540
20453812811048886
84.5420
anovak-vgINDEL*func_cdshomalt
87.7119
91.5929
84.1463
33.8710
207192073935
89.7436
jli-customINDELD6_15HG002compoundhet*
96.8618
95.8809
97.8630
33.8766
86593728655189186
98.4127
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9811
96.5062
99.5018
33.8856
657423865913332
96.9697
rpoplin-dv42INDELD16_PLUSHG002compoundhet*
86.6377
85.3054
88.0123
33.8869
19973441997272272
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.4325
88.9626
98.3752
33.8873
6569815641810680
75.4717
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6397
99.6465
99.6329
33.8966
7329267327278
29.6296
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
53.4601
48.8889
58.9744
33.8983
2223231616
100.0000
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
76.2700
83.0508
70.5128
33.8983
49101104645
97.8261
mlin-fermikitSNPtiHG002complexvarhetalt
96.0000
92.7536
99.4819
33.9041
1921519211
100.0000
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.5341
99.1135
96.0043
33.9044
55954445185173
93.5135
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9557
84.7716
98.1132
33.9074
100218010922118
85.7143
ghariani-varprowlSNPtv*het
98.5275
99.8276
97.2608
33.9264
590670102059087716641154
0.9254
jmaeng-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
33.9286
7407400
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.8873
100.0000
99.7748
33.9286
443044311
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.8851
96.3010
99.5221
33.9384
7552983344
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5860
95.8996
99.3328
33.9394
114649119188
100.0000
jmaeng-gatkSNPtifunc_cdshet
99.2988
99.9412
98.6647
33.9419
8499584971151
0.8696
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.6836
70.6547
99.6488
33.9430
4813199948231717
100.0000
gduggal-snapfbINDELI6_15func_cds*
74.3590
67.4419
82.8571
33.9623
29142966
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
58.9966
69.7941
51.0924
33.9623
305132304291291
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
91.2020
83.8269
100.0000
33.9650
3687145300
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.8437
99.8912
99.7961
33.9853
734787343153
20.0000