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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22451-22500 / 86044 show all
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.2126
92.7854
99.9028
33.4520
2032158205522
100.0000
gduggal-snapvardINDELI1_5HG002complexvarhomalt
92.5606
86.5333
99.4905
33.4524
116371811109355651
91.0714
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.1072
91.8336
52.8714
33.4573
59653312127822751
98.8857
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.4118
79.2549
90.2866
33.4746
9362451134122120
98.3607
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5185
99.0415
100.0000
33.4764
310331000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4603
98.9667
99.9588
33.4796
727976727532
66.6667
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3082
94.8858
99.8574
33.4809
2078112210133
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
98.3798
96.8112
100.0000
33.4921
7592583800
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.1957
95.2092
99.2668
33.4959
15707917601313
100.0000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2782
97.1365
99.4471
33.4959
10109298176269890
91.8367
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1489
92.9019
99.6311
33.4986
13036996132324948
97.9592
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5845
75.5146
56.4183
33.5145
55761808842165055048
77.6018
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.2273
94.7806
99.8035
33.5162
2506138254055
100.0000
mlin-fermikitINDEL*func_cdshomalt
99.5595
100.0000
99.1228
33.5277
226022622
100.0000
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
46.3373
71.5686
34.2593
33.5385
732974142132
92.9577
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2201
93.2179
99.4222
33.5409
635046263673731
83.7838
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2697
98.7490
99.7960
33.5412
244731244650
0.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8715
99.8106
97.9499
33.5489
4744947309997
97.9798
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4469
98.9759
99.9224
33.5509
386640386532
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
98.0651
97.0076
99.1459
33.5614
395512239473424
70.5882
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
98.3139
96.6837
100.0000
33.5714
7582683700
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.6197
95.7908
99.5198
33.5726
7513382944
100.0000
astatham-gatkINDELD6_15*hetalt
97.1014
94.8251
99.4898
33.5762
775142378004039
97.5000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
82.5379
70.8333
98.8764
33.5821
1778811
100.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5524
94.0012
99.2459
33.5901
15209717111313
100.0000
ckim-gatkSNPtifunc_cdshet
99.5548
99.9412
99.1713
33.6071
849958497711
1.4085
egarrison-hhgaINDELD1_5func_cds*
99.6865
100.0000
99.3750
33.6100
159015910
0.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
92.7880
87.7185
98.4794
33.6241
90851272906714097
69.2857
gduggal-bwafbSNPtiHG002compoundhethomalt
99.3188
99.5943
99.0449
33.6250
73643073637158
81.6901
astatham-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9355
96.4181
99.5014
33.6275
656824465853332
96.9697
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
92.7323
87.5000
98.6301
33.6364
21314421
50.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4748
95.1598
99.9052
33.6375
2084106210722
100.0000
anovak-vgINDELI6_15*homalt
61.4755
80.7661
49.6232
33.6435
50391200520252814685
88.7143
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.1761
91.8265
98.7793
33.6573
201117920232522
88.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.9241
99.9133
99.9349
33.6595
46124460732
66.6667
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6612
95.4654
99.9603
33.6622
100004751008243
75.0000
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
44.5902
28.6920
100.0000
33.6634
681696700
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.9688
92.2844
99.9596
33.6636
2440204247611
100.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4416
94.4303
96.4748
33.6724
48322854844177175
98.8701
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6672
99.8461
33.6736
389313389262
33.3333
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7729
93.7900
99.9519
33.6738
2054136207711
100.0000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.8117
99.6241
100.0000
33.6853
13255131900
jlack-gatkSNPtifunc_cdshet
99.1254
99.9765
98.2886
33.6861
8502285001481
0.6757
hfeng-pmm3INDELD16_PLUSHG002compoundhet*
95.0927
93.1226
97.1480
33.6879
218016121806463
98.4375
jlack-gatkINDELD6_15*hetalt
94.6900
90.3964
99.4119
33.6937
738978574384437
84.0909
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
19.5758
15.3515
27.0073
33.7097
107590111300272
90.6667
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.2050
96.8677
97.5447
33.7225
70202277032177164
92.6554
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.1522
95.1464
99.2443
33.7229
113758118298
88.8889
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1413
92.8877
99.6311
33.7242
13034998132344949
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6647
99.7834
99.5462
33.7248
4606104607212
9.5238