PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 444 445 446 447 448 449 450 451 452 ... 1720 1721 » 22351-22400 / 86044 show all
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	68.0898	55.0736	89.1626	33.2237	711	580	362	44	24	54.5455
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1607	93.4776	99.0024	33.2299	8685	606	8733	88	82	93.1818
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1607	93.4776	99.0024	33.2299	8685	606	8733	88	82	93.1818
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.0444	86.0070	98.9933	33.2437	1469	239	1475	15	15	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9875	100.0000	99.9749	33.2441	3987	0	3987	1	1	100.0000
ckim-isaac	INDEL	D6_15	*	hetalt	90.6237	83.9246	98.4851	33.2460	6860	1314	7281	112	99	88.3929
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4355	95.0263	99.9701	33.2469	9954	521	10036	3	2	66.6667
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.6839	72.6708	98.6312	33.2487	1287	484	1297	18	13	72.2222
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.2667	91.9260	98.8593	33.2487	2334	205	2860	33	31	93.9394
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8389	99.9596	99.7185	33.2528	2477	1	2480	7	3	42.8571
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9635	99.9270	33.2602	2737	1	2737	2	1	50.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3616	98.9595	99.7670	33.2686	1712	18	1713	4	3	75.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.9073	92.8033	99.2261	33.2760	1109	86	1154	9	8	88.8889
gduggal-snapvard	INDEL	D6_15	HG002compoundhet	*	59.7955	51.4782	71.3183	33.2912	4649	4382	4896	1969	1719	87.3032
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5563	93.4447	99.8823	33.2941	1511	106	1697	2	2	100.0000
gduggal-bwavard	INDEL	I1_5	*	homalt	95.1435	90.7626	99.9687	33.2973	54846	5582	54343	17	11	64.7059
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.5627	95.6563	99.5467	33.3070	10020	455	10102	46	45	97.8261
ltrigg-rtg2	SNP	ti	HG002compoundhet	*	99.3879	98.9873	99.7918	33.3089	17301	177	17255	36	13	36.1111
gduggal-snapvard	SNP	*	func_cds	het	99.2494	99.0323	99.4675	33.3113	11053	108	11020	59	21	35.5932
ckim-isaac	INDEL	I16_PLUS	HG002compoundhet	hetalt	65.1901	48.5428	99.2149	33.3115	1016	1077	1011	8	7	87.5000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	93.9157	91.6952	96.2464	33.3267	22502	2038	22436	875	753	86.0571
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	84.4279	81.5933	87.4666	33.3286	20023	4517	20601	2952	2912	98.6450
egarrison-hhga	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
dgrover-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
ckim-isaac	INDEL	I6_15	func_cds	*	91.1392	83.7209	100.0000	33.3333	36	7	36	0	0
ckim-isaac	INDEL	I6_15	func_cds	hetalt	66.6667	50.0000	100.0000	33.3333	2	2	2	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	21.2121	11.8644	100.0000	33.3333	7	52	12	0	0
ghariani-varprowl	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
gduggal-snapfb	INDEL	I6_15	func_cds	hetalt	50.0000	50.0000	50.0000	33.3333	2	2	1	1	1	100.0000
gduggal-snapfb	INDEL	I6_15	tech_badpromoters	hetalt	80.0000	66.6667	100.0000	33.3333	2	1	2	0	0
hfeng-pmm1	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
ghariani-varprowl	INDEL	I6_15	func_cds	homalt	88.8889	80.0000	100.0000	33.3333	12	3	12	0	0
hfeng-pmm3	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
hfeng-pmm3	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
jlack-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
hfeng-pmm2	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
hfeng-pmm2	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.6522	91.6667	100.0000	33.3333	11	1	12	0	0
ckim-dragen	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.6522	91.6667	100.0000	33.3333	11	1	12	0	0
cchapple-custom	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	33.3333	4	0	4	0	0
cchapple-custom	INDEL	I6_15	func_cds	homalt	96.7742	100.0000	93.7500	33.3333	15	0	15	1	1	100.0000
ciseli-custom	INDEL	D1_5	tech_badpromoters	het	60.0000	75.0000	50.0000	33.3333	6	2	6	6	2	33.3333
gduggal-snapfb	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_51to200	het		0.0000	0.0000	33.3333	0	0	0	2	0	0.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	homalt	86.9565	76.9231	100.0000	33.3333	10	3	10	0	0
gduggal-bwafb	INDEL	I16_PLUS	func_cds	het	61.5385	44.4444	100.0000	33.3333	4	5	4	0	0
gduggal-bwafb	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge