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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22301-22350 / 86044 show all
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
75.1880
60.2410
100.0000
32.9412
50335700
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
0.0000
32.9412
000570
0.0000
ckim-gatkINDELD6_15*hetalt
96.8620
94.3602
99.5001
32.9523
771346177623939
100.0000
ckim-vqsrINDELD6_15*hetalt
96.8555
94.3479
99.5000
32.9551
771246277613939
100.0000
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9479
95.9924
99.9847
32.9893
6539273655610
0.0000
jmaeng-gatkINDELD6_15*hetalt
96.4840
93.6261
99.5219
32.9957
765352177023737
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8482
97.7227
100.0000
32.9973
145934146200
qzeng-customSNP*func_cdshet
99.6863
99.8118
99.5610
32.9992
111402111112491
2.0408
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6530
93.6073
99.9036
32.9997
2050140207322
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
70.4663
54.4000
100.0000
33.0000
68576700
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0900
94.8591
99.4283
33.0075
653235466093838
100.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
40.0000
85.7143
26.0870
33.0097
183185151
100.0000
ltrigg-rtg2INDELI6_15HG002compoundhet*
96.9852
94.9521
99.1073
33.0128
833344382157467
90.5405
anovak-vgSNP*tech_badpromotershomalt
94.1001
90.0000
98.5915
33.0189
7287011
100.0000
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
89.3374
80.8410
99.8295
33.0289
3076729175732
66.6667
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
95.4742
91.7900
99.4666
33.0334
961586096975246
88.4615
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
87.2093
77.3196
100.0000
33.0357
75227500
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
74.1810
59.3050
99.0185
33.0396
4847332644394437
84.0909
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
68.5368
52.3702
99.1416
33.0460
23221123121
50.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.8494
99.6992
100.0000
33.0461
13264132100
ckim-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7140
95.9777
99.5142
33.0521
653827465553232
100.0000
ndellapenna-hhgaINDELD1_5func_cds*
99.6865
100.0000
99.3750
33.0544
159015910
0.0000
ckim-vqsrINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7063
95.9630
99.5141
33.0555
653727565543232
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.1546
63.0485
99.3919
33.0569
8678508688265453
98.1481
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
96.6143
93.9646
99.4178
33.0736
44062834440265
19.2308
hfeng-pmm3INDELD6_15*hetalt
96.8203
93.8708
99.9612
33.0763
7673501772232
66.6667
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9495
96.9056
99.0161
33.0779
1769456518416183178
97.2678
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9506
94.1018
99.9772
33.0820
8743548878521
50.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9506
94.1018
99.9772
33.0820
8743548878521
50.0000
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
53.6328
46.6667
63.0435
33.0909
21241166867
98.5294
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
29.7872
24.6479
37.6344
33.0935
35107355857
98.2759
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.8591
94.8571
98.9474
33.0986
3321837644
100.0000
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3905
98.9595
99.8252
33.0994
171218171332
66.6667
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4991
95.5520
99.5272
33.1055
650930365263131
100.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3295
95.4449
99.2901
33.1072
9014397977
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.9252
99.9048
99.9456
33.1240
73487734343
75.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.9874
96.4793
99.5434
33.1326
781028578493636
100.0000
cchapple-customINDEL*func_cdshomalt
99.5575
99.5575
99.5575
33.1361
225122511
100.0000
gduggal-bwafbINDELI16_PLUSHG002compoundhet*
58.0785
43.2571
88.3503
33.1438
92712161039137136
99.2701
jli-customINDELD6_15*hetalt
97.5456
95.7181
99.4442
33.1475
782435078724442
95.4545
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.2644
90.8623
95.7970
33.1527
18714188218667819734
89.6215
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
96.8828
94.3878
99.5134
33.1707
7404481844
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8238
92.6407
99.2335
33.1757
149811916831313
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
33.1832
443044322
100.0000
ltrigg-rtg1SNP*HG002compoundhethomalt
98.8047
97.7741
99.8572
33.1849
1054224010491158
53.3333
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4632
95.4749
99.5360
33.1882
10001474100834746
97.8723
gduggal-snapvardINDELD6_15HG002compoundhethet
67.0812
63.3178
71.3203
33.1905
542314489419681718
87.2967
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.2238
98.4595
100.0000
33.1973
147023147300
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
73.8603
58.8768
99.0735
33.2105
4812336144914236
85.7143
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
88.7324
79.7468
100.0000
33.2155
1894818900