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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22251-22300 / 86044 show all
cchapple-customSNPtvfunc_cds*
99.5556
99.9085
99.2053
32.6708
436744369350
0.0000
gduggal-bwavardINDELI1_5HG002complexvarhomalt
96.0632
92.4747
99.9414
32.6716
1243610121193175
71.4286
hfeng-pmm3INDELD6_15HG002compoundhet*
95.1894
92.4704
98.0731
32.6928
83516808347164158
96.3415
jlack-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
88.0509
79.0340
99.3902
32.6949
1440382146798
88.8889
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2194
86.3886
98.8943
32.6995
157424816101816
88.8889
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
78.2556
64.3957
99.7182
32.7011
5983330860151717
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
78.2556
64.3957
99.7182
32.7011
5983330860151717
100.0000
bgallagher-sentieonINDELD6_15*hetalt
96.5632
93.7974
99.4971
32.7057
766750777163938
97.4359
ckim-isaacINDEL*HG002compoundhethetalt
88.0188
79.0747
99.2444
32.7152
19911526920095153126
82.3529
gduggal-bwavardSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.6866
97.5389
99.8617
32.7198
6579166649797
77.7778
ckim-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.7273
7407400
ckim-vqsrINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.7273
7407400
rpoplin-dv42INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
60.0000
43.3735
97.2973
32.7273
36473611
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1571
94.8660
99.5615
32.7282
881447788553937
94.8718
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1571
94.8660
99.5615
32.7282
881447788553937
94.8718
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.9298
94.4344
99.5608
32.7290
989258399744444
100.0000
qzeng-customINDELD16_PLUSHG002compoundhet*
75.9486
81.4609
71.1351
32.7367
19074342112857326
38.0397
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.5532
95.6633
99.5192
32.7405
7503482844
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1576
98.5265
99.7969
32.7413
147122147433
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.8232
99.7013
32.7459
7342137343223
13.6364
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8435
99.7712
99.9160
32.7499
13083119011
100.0000
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3919
95.3611
99.5111
32.7822
649631665133232
100.0000
hfeng-pmm1INDELD6_15HG002compoundhet*
95.4940
92.9354
98.1974
32.8011
83936388389154150
97.4026
ndellapenna-hhgaINDELD16_PLUSHG002compoundhethetalt
63.9739
47.1473
99.4764
32.8056
909101976043
75.0000
gduggal-bwafbINDEL*func_cdshomalt
97.9684
96.0177
100.0000
32.8173
217921700
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9982
90.5081
99.9572
32.8251
2298241233411
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.4378
97.3195
99.5821
32.8253
664418366722828
100.0000
jli-customINDELI1_5func_cds*
100.0000
100.0000
100.0000
32.8358
180018000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.7528
96.0459
99.5215
32.8514
7533183244
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.7528
96.0459
99.5215
32.8514
7533183244
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2978
94.0048
98.7055
32.8581
984762810599139132
94.9640
ckim-dragenINDELD6_15*hetalt
96.4645
93.5894
99.5217
32.8589
765052476993737
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0416
94.2633
99.9886
32.8733
8758533880210
0.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0416
94.2633
99.9886
32.8733
8758533880210
0.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0913
94.4749
99.8568
32.8741
2069121209233
100.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
94.9496
91.0460
99.2028
32.8775
1088107112099
100.0000
ltrigg-rtg2SNP*HG002compoundhethomalt
99.4265
98.9241
99.9340
32.8863
106661161060376
85.7143
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
99.0099
98.0392
100.0000
32.8947
5015100
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3023
95.7627
98.8922
32.9054
904409821110
90.9091
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.8138
96.2869
99.3900
32.9111
6431248136868481
96.4286
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
74.6483
60.2410
98.1132
32.9114
50335211
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7034
94.0086
99.5573
32.9140
761048576463434
100.0000
cchapple-customINDELD1_5func_cds*
99.6885
100.0000
99.3789
32.9167
159016010
0.0000
ltrigg-rtg1INDELI6_15HG002compoundhet*
94.7100
90.6791
99.1159
32.9210
795881878487064
91.4286
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
68.2551
91.4186
54.4569
32.9265
52249296324782470
99.6772
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
96.2467
94.3662
98.2036
32.9317
134816432
66.6667
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.7147
97.4166
98.0146
32.9344
388410339007974
93.6709
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7146
97.7227
99.7268
32.9363
145934146044
100.0000
gduggal-bwavardINDELI6_15*homalt
80.3317
67.3345
99.5468
32.9387
4201203841731915
78.9474
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1916
98.5934
99.7970
32.9401
147221147533
100.0000