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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 440 441 442 443 444 445 446 447 448 ... 1720 1721 » 22151-22200 / 86044 show all
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.0419	95.4134	96.6787	32.0948	4535	218	4541	156	154	98.7179
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	58.2286	59.3301	57.1672	32.0973	248	170	335	251	223	88.8446
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8870	99.7743	100.0000	32.1045	442	1	442	0	0
asubramanian-gatk	INDEL	D1_5	func_cds	homalt	100.0000	100.0000	100.0000	32.1101	74	0	74	0	0
raldana-dualsentieon	INDEL	D6_15	*	hetalt	96.4666	93.1857	99.9870	32.1144	7617	557	7666	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0215	98.2585	99.7963	32.1198	1467	26	1470	3	3	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	58.2480	73.8182	48.1020	32.1234	609	216	1736	1873	1859	99.2525
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	58.2480	73.8182	48.1020	32.1234	609	216	1736	1873	1859	99.2525
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	40.8005	87.2340	26.6272	32.1285	41	6	45	124	115	92.7419
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	32.1349	2736	2	2736	1	1	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	35.5751	30.6061	42.4704	32.1470	101	229	251	340	290	85.2941
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	88.5630	82.2103	95.9796	32.1478	5661	1225	1886	79	51	64.5570
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	85.2596	74.3610	99.9015	32.1524	931	321	1014	1	1	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	48.5484	60.8696	40.3756	32.1656	14	9	86	127	125	98.4252
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	63.5703	52.8321	79.7871	32.1688	3134	2798	11092	2810	2788	99.2171
jpowers-varprowl	SNP	*	func_cds	het	99.1057	99.2922	98.9199	32.1729	11082	79	11082	121	2	1.6529
eyeh-varpipe	SNP	tv	func_cds	*	94.7737	99.9771	90.0850	32.1750	4370	1	4343	478	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7001	99.4290	99.9726	32.1925	7313	42	7309	2	1	50.0000
gduggal-bwavard	SNP	ti	func_cds	het	99.2690	99.0710	99.4677	32.1944	8425	79	8409	45	15	33.3333
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	46.9083	32.3849	85.0498	32.2072	387	808	256	45	39	86.6667
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8356	99.8174	99.8539	32.2109	2733	5	2734	4	3	75.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.1661	96.3983	100.0000	32.2115	910	34	987	0	0
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	81.8508	71.2279	96.1979	32.2123	2332	942	6806	269	258	95.9108
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.2925	97.1972	99.4127	32.2154	6693	193	6771	40	40	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	75.7194	61.1022	99.5294	32.2169	765	487	846	4	3	75.0000
anovak-vg	INDEL	D16_PLUS	HG002compoundhet	*	28.7549	21.7001	42.6065	32.2197	508	1833	510	687	477	69.4323
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9517	89.0231	99.4582	32.2317	1622	200	1652	9	8	88.8889
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	89.8927	82.1104	99.3046	32.2337	1354	295	1428	10	10	100.0000
mlin-fermikit	SNP	*	*	hetalt	97.1091	94.4891	99.8786	32.2368	823	48	823	1	1	100.0000
mlin-fermikit	SNP	tv	*	hetalt	97.1091	94.4891	99.8786	32.2368	823	48	823	1	1	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0193	98.0576	100.0000	32.2402	1464	29	1467	0	0
ckim-dragen	SNP	ti	func_cds	het	99.3804	99.9647	98.8029	32.2466	8501	3	8501	103	1	0.9709
ciseli-custom	INDEL	I6_15	func_cds	*	53.1250	39.5349	80.9524	32.2581	17	26	17	4	4	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	32.2581	21	0	21	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	32.2581	21	0	21	0	0
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	90.5907	83.7697	98.6209	32.2653	6751	1308	7151	100	87	87.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	90.5907	83.7697	98.6209	32.2653	6751	1308	7151	100	87	87.0000
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.8248	88.7486	99.5169	32.2699	1617	205	1648	8	8	100.0000
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	97.3224	97.0558	97.5904	32.2861	3791	115	3807	94	61	64.8936
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.5421	97.3208	99.7944	32.2970	1453	40	1456	3	3	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	26.8403	19.6198	42.4704	32.3024	258	1057	251	340	290	85.2941
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.8267	90.2557	99.8855	32.3046	4307	465	4360	5	4	80.0000
jli-custom	INDEL	D16_PLUS	HG002compoundhet	*	96.5889	95.5575	97.6430	32.3191	2237	104	2237	54	53	98.1481
anovak-vg	SNP	ti	func_cds	het	98.3229	97.6129	99.0434	32.3272	8301	203	8283	80	49	61.2500
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2807	95.0784	99.5875	32.3304	6491	336	6518	27	27	100.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	93.8172	88.6758	99.5914	32.3428	1942	248	1950	8	8	100.0000

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