PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22101-22150 / 86044 show all
ndellapenna-hhgaINDELI1_5func_cds*
99.4475
100.0000
98.9011
31.8352
180018020
0.0000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.4079
40.5785
44.4101
31.8353
14172075201425212293
90.9560
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5924
95.7627
99.4934
31.8370
9044098255
100.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
67.0086
90.2935
53.2710
31.8471
40043399350337
96.2857
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5327
99.1984
99.8692
31.8675
457937458061
16.6667
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5185
99.0415
100.0000
31.8681
310331000
egarrison-hhgaINDELD16_PLUSHG002compoundhethetalt
60.1689
43.1017
99.6134
31.8701
831109777333
100.0000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
82.5301
85.0932
80.1170
31.8725
137241373415
44.1176
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.4325
98.8713
100.0000
31.8818
438543800
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
69.2731
53.6082
97.8723
31.8841
52454610
0.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8385
99.8386
99.8385
31.8944
24744247340
0.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0423
85.9024
99.1274
31.9073
11091821136108
80.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.3680
92.4804
96.3342
31.9134
16886137316845641574
89.5476
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.3778
69.3846
98.3834
31.9182
45119942676
85.7143
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.5228
97.5359
99.5300
31.9212
530413452942525
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6201
99.3057
99.9365
31.9250
472033471833
100.0000
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.3235
86.4435
99.0619
31.9285
157524715841515
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.4561
99.0468
99.8688
31.9345
457244456860
0.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.3909
99.0035
99.7815
31.9351
4570464566102
20.0000
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
80.6871
76.7630
85.0340
31.9444
13284021375242240
99.1736
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
83.9013
72.7088
99.1667
31.9471
35713435733
100.0000
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6332
95.3758
100.0000
31.9545
6497315651400
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7385
93.7300
99.9465
31.9578
129018631308576
85.7143
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.9120
63.9658
99.6350
31.9608
5155290451861918
94.7368
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.9120
63.9658
99.6350
31.9608
5155290451861918
94.7368
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2570
93.3938
99.3014
31.9625
978369298086968
98.5507
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.4676
77.4068
58.2374
31.9666
51701509769255164283
77.6468
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.4203
91.7332
99.4161
31.9693
128721160129417675
98.6842
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
51.5152
34.6939
100.0000
32.0000
17321700
ckim-isaacINDELD1_5tech_badpromoters*
94.4444
89.4737
100.0000
32.0000
1721700
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.5782
86.5532
99.5046
32.0000
1577245160787
87.5000
gduggal-bwafbINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
34.0000
20.4819
100.0000
32.0000
17661700
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
99.0099
98.0392
100.0000
32.0000
5015100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6457
99.4290
99.8635
32.0123
7313427315104
40.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8538
99.7443
99.9634
32.0149
27317273210
0.0000
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1692
87.2119
100.0000
32.0201
1589233162200
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.3586
95.0374
99.7961
32.0399
2413126244755
100.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7071
99.5105
99.9045
32.0412
731936732172
28.5714
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6200
99.3718
99.8694
32.0414
458729458862
33.3333
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9231
96.3983
99.4970
32.0574
9103498955
100.0000
ciseli-customSNPtvfunc_cdshet
92.8964
99.2473
87.3095
32.0576
26372026353832
0.5222
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.0510
92.4380
99.9581
32.0604
2347192238311
100.0000
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
66.7314
81.9672
56.2718
32.0710
10022323251223
88.8446
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.0989
95.1988
99.0764
32.0722
173108731737916293
57.4074
eyeh-varpipeINDELI6_15func_cds*
88.6076
81.3953
97.2222
32.0755
3583511
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
54.1353
37.1134
100.0000
32.0755
36613600
gduggal-bwafbINDELD6_15HG002compoundhet*
88.7012
84.9518
92.7969
32.0774
767213598799683663
97.0717
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50het
96.3741
93.2180
99.7514
32.0838
1993145200650
0.0000
egarrison-hhgaINDELI1_5func_cds*
99.4475
100.0000
98.9011
32.0896
180018020
0.0000