PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22001-22050 / 86044 show all
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
77.1881
96.8041
64.1824
31.3791
100263311624290649022
99.5366
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.1020
85.3602
100.0000
31.3904
1102189113000
qzeng-customINDELD6_15HG002compoundhet*
81.7565
82.9255
80.6200
31.3934
7489154285822063963
46.6796
asubramanian-gatkINDELI1_5func_cdshomalt
99.5781
99.1597
100.0000
31.3953
118111800
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.6844
90.6909
99.0458
31.4136
154915915571515
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
80.9710
68.2936
99.4281
31.4166
7584352176494444
100.0000
jpowers-varprowlINDEL*func_cdshomalt
94.1725
89.3805
99.5074
31.4189
2022420211
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6541
99.6750
99.6331
31.4341
4601154616172
11.7647
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
gduggal-snapplatINDEL*func_cdshomalt
81.6523
71.6814
94.8454
31.4488
16264184101
10.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.7443
92.7854
98.8981
31.4540
203215825132826
92.8571
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3694
95.3108
99.5190
31.4561
518325551722525
100.0000
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
81.6561
69.2510
99.4755
31.4587
2635117026551414
100.0000
bgallagher-sentieonSNPtvfunc_cdshet
99.7184
100.0000
99.4384
31.4601
265702656150
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.5245
69.8462
97.8923
31.4607
45419641898
88.8889
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
59.9212
54.8636
66.0058
31.4666
51894269519426752487
92.9720
gduggal-snapfbINDELI6_15*het
80.8118
75.9494
86.3394
31.4688
762024131215419231866
97.0359
rpoplin-dv42INDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
astatham-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
bgallagher-sentieonINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
dgrover-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.6166
92.7056
98.7164
31.4832
12760100413612177161
90.9605
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
97.5847
95.9538
99.2721
31.4921
16607017731312
92.3077
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.4526
86.3337
99.5050
31.4964
1573249160888
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3707
95.3390
99.4908
31.5202
9004497755
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5910
99.3338
99.8496
31.5262
7306497302113
27.2727
ckim-isaacSNP*tech_badpromoters*
93.2432
87.8981
99.2806
31.5271
1381913810
0.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
anovak-vgINDELI6_15HG002compoundhet*
31.2822
22.7666
49.9744
31.5356
19986778195419561488
76.0736
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6454
95.9224
99.4314
31.5401
682229068203939
100.0000
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
87.6621
78.3888
99.4236
31.5582
1012279103565
83.3333
gduggal-snapfbINDEL*func_cdshomalt
95.3704
91.1504
100.0000
31.5615
2062020600
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.7824
97.6925
99.8969
31.5687
389592387444
100.0000
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2212
85.5653
100.0000
31.5699
1559263159100
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9211
94.3694
99.6146
31.5700
12989775131825150
98.0392
ciseli-customINDELD6_15HG002compoundhethomalt
0.9875
87.5000
0.4965
31.5704
2132346094348
94.3372
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.3105
97.4328
99.2041
31.5728
2391063024805199188
94.4724
asubramanian-gatkSNPtifunc_cdshet
99.6530
99.6472
99.6589
31.5760
8474308472291
3.4483
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
31.5789
1301300
ckim-isaacINDELI6_15func_cdshomalt
92.8571
86.6667
100.0000
31.5789
1321300
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
67.7725
56.5217
84.6154
31.5789
13101121
50.0000
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
58.0645
50.0000
69.2308
31.5789
44944
100.0000
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6003
99.6750
99.5257
31.5929
4601154616222
9.0909