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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21951-22000 / 86044 show all
gduggal-snapplatINDELD1_5func_cdshomalt
91.9708
85.1351
100.0000
31.1475
63118400
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
31.1675
13083130211
100.0000
ltrigg-rtg1INDELD1_5func_cds*
99.0556
98.7421
99.3711
31.1688
157215810
0.0000
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
94.5039
89.7494
99.7904
31.1688
3944547611
100.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.2768
89.5307
99.5544
31.1699
123231441125115650
89.2857
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.4888
99.0901
99.8907
31.1720
457442457050
0.0000
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.5450
87.1936
98.5962
31.1755
206330321073029
96.6667
gduggal-snapfbINDELI1_5func_cdshomalt
99.1525
98.3193
100.0000
31.1765
117211700
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.2360
95.2999
99.2524
31.1832
15417617261313
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.0970
98.4127
99.7908
31.1983
192231190843
75.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
98.0843
96.2406
100.0000
31.1996
128050127900
ckim-vqsrINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.2139
119011900
ckim-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.2139
119011900
jmaeng-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.2139
119011900
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9791
94.1744
99.9560
31.2217
4494278454722
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.7486
99.5235
99.9748
31.2218
396819396210
0.0000
ndellapenna-hhgaSNPtiHG002compoundhethomalt
98.8916
99.5266
98.2646
31.2248
7359357361130119
91.5385
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.7068
93.6325
99.9899
31.2313
9808667989011
100.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
64.0121
47.2505
99.2032
31.2329
23225924921
50.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
91.7362
85.8358
98.5078
31.2346
797513168252125116
92.8000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
91.7362
85.8358
98.5078
31.2346
797513168252125116
92.8000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6089
93.9727
99.3973
31.2378
873156087415352
98.1132
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6089
93.9727
99.3973
31.2378
873156087415352
98.1132
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
97.6744
100.0000
95.4545
31.2500
2102111
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.0410
89.1557
99.4928
31.2609
1151140117765
83.3333
mlin-fermikitSNP*lowcmp_SimpleRepeat_triTR_11to50het
98.0092
96.5121
99.5535
31.2615
44551614459200
0.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
88.1620
79.3519
99.1726
31.2754
10922284225172118
85.7143
gduggal-bwaplatINDELI1_5func_cdshomalt
96.9697
94.1176
100.0000
31.2883
112711200
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5560
97.8984
93.3230
31.2914
559122418173165
95.3757
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.4680
77.9553
99.6251
31.2943
976276106344
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.4732
97.1869
99.7941
31.3060
145142145433
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.4732
97.1869
99.7941
31.3060
145142145433
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.7749
88.6135
99.5748
31.3084
1144147117155
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1404
98.4353
99.8557
31.3181
69211138421
50.0000
jlack-gatkSNPtv*het
99.3606
99.9332
98.7945
31.3268
5913013955912307214153
2.1209
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
97.6609
95.5759
99.8390
31.3433
125358124021
50.0000
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0334
80.6002
99.4376
31.3443
190745919451110
90.9091
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.2315
96.7180
99.7931
31.3447
144449144733
100.0000
jmaeng-gatkSNPtv*het
99.5410
99.5807
99.5013
31.3482
5892152481589142295352
1.7609
jli-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.8793
95.8466
100.0000
31.3501
3001330000
eyeh-varpipeINDELD1_5func_cds*
98.4442
98.7421
98.1481
31.3559
157215932
66.6667
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
97.2690
95.1945
99.4359
31.3606
124863123474
57.1429
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.4572
94.0150
99.0295
31.3640
700644670416948
69.5652
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.8193
73.8019
99.7033
31.3646
924328100833
100.0000
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.8870
99.7743
100.0000
31.3665
442144200
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2920
98.7455
99.8446
31.3666
385749385661
16.6667
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
82.7315
70.7276
99.6429
31.3725
83634683733
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8059
94.1587
99.6062
31.3760
12960804131545251
98.0769
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
71.5901
79.0706
65.4026
31.3787
2161572503626642476
92.9429