PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21901-21950 / 86044 show all
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
97.9828
97.6625
98.3051
30.8535
26746426684633
71.7391
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.3859
89.8140
99.4483
30.8646
212524121631211
91.6667
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6722
93.9296
99.5798
30.8791
872756487693737
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6722
93.9296
99.5798
30.8791
872756487693737
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6665
93.9188
99.5798
30.8815
872656587683737
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6665
93.9188
99.5798
30.8815
872656587683737
100.0000
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.0450
87.0668
99.9048
30.8983
2060306209822
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.0973
99.5904
96.6483
30.9022
1945819326767
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6139
95.3390
100.0000
30.9052
9004497700
eyeh-varpipeINDELD16_PLUSHG002compoundhethetalt
28.4846
16.7531
95.0298
30.9066
32316054782525
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2683
98.5472
100.0000
30.9086
244236244100
ckim-isaacINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
89.4118
80.8511
100.0000
30.9091
3893800
gduggal-bwafbSNPtifunc_cdshet
99.4792
99.9530
99.0099
30.9221
850048500852
2.3529
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6178
95.3805
99.9625
30.9240
105925131067143
75.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
81.7599
69.8795
98.5075
30.9278
58256611
100.0000
ckim-gatkSNPtv*het
99.5973
99.6088
99.5858
30.9441
5893812315589308245161
2.4888
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
54.8776
37.8708
99.6098
30.9469
18002953178777
100.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8081
34.5074
68.1144
30.9514
12052287454821292118
99.4833
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.7196
86.7545
99.5656
30.9538
1120171114654
80.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.9710
27362273611
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1377
92.8872
99.6239
30.9811
12785979129794949
100.0000
gduggal-snapplatSNP**het
98.7739
98.5851
98.9633
30.9812
1847092265091848114193602442
12.6136
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9269
99.8904
99.9635
30.9962
27353273511
100.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.6043
76.5298
99.7333
31.0028
36521120149644
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.5177
91.4612
99.9507
31.0075
2003187202611
100.0000
qzeng-customINDELD6_15HG002compoundhethet
88.1260
94.5093
82.5504
31.0108
8094785581809764
42.2333
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8567
93.9438
99.9559
31.0125
4483289453622
100.0000
gduggal-snapvardSNPtifunc_cdshet
99.3512
99.0945
99.6092
31.0131
84277784113313
39.3939
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.9839
85.7475
99.1986
31.0197
1107184111499
100.0000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
65.6565
49.0835
99.1266
31.0241
24125022721
50.0000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7439
99.7184
99.7695
31.0247
389511389593
33.3333
ltrigg-rtg2INDELD1_5func_cds*
99.3730
99.3711
99.3750
31.0345
158115910
0.0000
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
89.8876
81.6327
100.0000
31.0345
4092000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
88.1690
79.1569
99.4968
31.0362
1352356138477
100.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2383
92.7494
100.0000
31.0430
4426346447600
egarrison-hhgaSNPtiHG002compoundhethomalt
99.3116
99.4861
99.1378
31.0451
73563873596454
84.3750
ckim-vqsrSNPtiHG002compoundhethomalt
98.6436
97.3763
99.9445
31.0556
7200194720044
100.0000
cchapple-customINDELD16_PLUSHG002compoundhet*
93.0802
91.6275
94.5797
31.0588
21451962408138135
97.8261
anovak-vgINDELI1_5func_cdshomalt
87.3563
95.7983
80.2817
31.0680
11451142826
92.8571
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2379
87.4049
99.9050
31.0740
2068298210322
100.0000
cchapple-customSNP*HG002compoundhethomalt
99.5150
99.0818
99.9520
31.0764
10683991041955
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4704
93.2214
99.9539
31.0883
128319331301965
83.3333
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
86.9410
77.6358
98.7805
31.0924
2437024333
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.8528
88.9193
99.3658
31.1088
455056745442925
86.2069
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.5547
73.4026
99.7027
31.1263
919333100633
100.0000
gduggal-bwaplatSNPtifunc_cds*
99.4984
99.2747
99.7231
31.1374
1368710013687384
10.5263
ckim-vqsrSNPtv*het
99.3645
98.9162
99.8170
31.1430
5852836413585211107339
3.6347
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0140
98.1239
99.9205
31.1473
502196502544
100.0000
ltrigg-rtg1INDELI6_15func_cds*
98.8235
97.6744
100.0000
31.1475
4214200
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7805
99.6348
99.9267
31.1475
272810272822
100.0000