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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21801-21850 / 86044 show all
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
68.0272
51.5464
100.0000
30.4348
50474800
ckim-isaacSNPtvtech_badpromotershet
95.3846
93.9394
96.8750
30.4348
3123110
0.0000
ckim-dragenSNPtiHG002compoundhethomalt
99.8648
99.9053
99.8243
30.4352
7387773881313
100.0000
raldana-dualsentieonSNPtiHG002compoundhethomalt
99.9189
99.9189
99.9189
30.4421
73886738866
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9125
94.0563
99.9476
30.4494
7580479762543
75.0000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
96.3560
93.3144
99.6025
30.4588
65647125354
80.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
92.8637
87.9925
98.3058
30.4621
419957344687770
90.9091
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9087
99.8904
99.9269
30.4624
27353273522
100.0000
gduggal-snapplatINDELI1_5func_cdshomalt
83.8633
78.1513
90.4762
30.4636
932695101
10.0000
dgrover-gatkSNPtiHG002compoundhethomalt
99.9121
99.9189
99.9053
30.4654
73886738877
100.0000
astatham-gatkSNPtiHG002compoundhethomalt
99.8918
99.8783
99.9053
30.4740
73859738577
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
eyeh-varpipeINDELI6_15HG002compoundhet*
36.3679
28.3500
50.7094
30.4777
24886288250224322425
99.7122
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.6996
99.6713
99.7279
30.4782
27299256673
42.8571
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.4011
86.1348
99.6507
30.4797
1112179114144
100.0000
bgallagher-sentieonSNPtiHG002compoundhethomalt
99.9053
99.9189
99.8918
30.4822
73886738888
100.0000
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6252
94.1534
99.2303
30.5059
449327945123532
91.4286
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6358
95.7046
99.6464
30.5076
10628477107093837
97.3684
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9626
93.3863
98.6851
30.5076
7526533758010197
96.0396
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9626
93.3863
98.6851
30.5076
7526533758010197
96.0396
rpoplin-dv42SNPtvfunc_cdshet
99.8871
99.9247
99.8495
30.5098
26552265441
25.0000
ckim-dragenSNP*func_cds*
99.5474
99.9669
99.1313
30.5099
181446181441591
0.6289
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7955
94.3933
99.3232
30.5115
112867117488
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7955
94.3933
99.3232
30.5115
112867117488
100.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.3918
87.9802
99.5128
30.5121
1603219163488
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.3918
87.9802
99.5128
30.5121
1603219163488
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
80.9217
68.6747
98.4848
30.5263
57266511
100.0000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8269
92.5398
99.3561
30.5284
441635649383231
96.8750
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5647
99.1333
100.0000
30.5303
915891700
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.5450
95.2077
100.0000
30.5361
2981529800
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0172
94.5909
99.5711
30.5429
13273759134665856
96.5517
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
81.6845
71.0843
96.0000
30.5556
59247233
100.0000
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
88.7545
83.2610
95.0242
30.5643
13432706092319295
92.4765
gduggal-snapfbSNP*func_cdshet
99.5360
99.9462
99.1291
30.5670
11155611155981
1.0204
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5105
95.6899
99.4017
30.5702
364116436552222
100.0000
ltrigg-rtg2INDELD6_15HG002compoundhet*
97.5434
95.9362
99.2054
30.5780
866436786156963
91.3043
hfeng-pmm2SNPtvfunc_cdshet
99.8684
100.0000
99.7371
30.5787
26570265670
0.0000
hfeng-pmm1SNPtiHG002compoundhethomalt
99.9392
99.9594
99.9189
30.5967
73913739166
100.0000
asubramanian-gatkSNPtiHG002compoundhethomalt
98.3931
96.8894
99.9442
30.6032
7164230716443
75.0000
astatham-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
82.5864
71.0843
98.5294
30.6122
59246711
100.0000
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2241
87.7430
99.4356
30.6136
207629021141211
91.6667
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3457
98.6999
100.0000
30.6231
9111291300
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.4817
76.5507
99.3735
30.6252
202462020621311
84.6154
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
47.4248
37.3206
65.0316
30.6257
156262411221186
84.1629
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.3126
89.6450
99.4931
30.6266
212124521591111
100.0000
jmaeng-gatkSNPtiHG002compoundhethomalt
99.4701
99.0127
99.9317
30.6381
732173732155
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7653
92.1626
99.6610
30.6426
439837444101515
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
30.6546
13083130211
100.0000
ltrigg-rtg1INDELD6_15HG002compoundhet*
96.2411
93.4780
99.1726
30.6557
844258983907063
90.0000