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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21501-21550 / 86044 show all
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
73.7836
58.7520
99.1512
28.6930
4011281637383226
81.2500
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
79.1206
94.1309
68.2390
28.6996
41726434202202
100.0000
rpoplin-dv42INDELI6_15HG002compoundhethetalt
95.0099
90.5470
99.9355
28.7042
7730807774255
100.0000
ghariani-varprowlSNPtvfunc_cdshomalt
99.7950
100.0000
99.5909
28.7083
17040170475
71.4286
gduggal-snapfbINDELD1_5func_cdshomalt
98.6301
97.2973
100.0000
28.7129
7227200
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_11to50het
97.1923
94.8440
99.6599
28.7215
43782384395150
0.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0656
94.3233
99.9723
28.7295
3589216360611
100.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.1193
94.4000
100.0000
28.7356
118712400
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.7879
63.7655
99.7160
28.7405
4535257745641313
100.0000
qzeng-customSNP*func_cds*
99.7598
99.8182
99.7016
28.7413
181173318040544
7.4074
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
80.2738
67.8208
98.3287
28.7698
33315835366
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.9114
94.6773
99.2536
28.7725
451825445213434
100.0000
jli-customINDELI6_15HG002compoundhethetalt
97.1767
94.5414
99.9630
28.7734
8071466810933
100.0000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1726
72.6852
64.1876
28.7853
15759794443440
99.3228
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
85.8383
78.3200
94.9533
28.7854
63401755203210863
58.3333
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6923
99.5392
99.8459
28.7987
388818388861
16.6667
ndellapenna-hhgaSNPtvfunc_cdshet
99.8872
99.9624
99.8121
28.8312
26561265650
0.0000
hfeng-pmm3INDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
28.8462
7407400
eyeh-varpipeINDELD6_15HG002compoundhethetalt
46.3719
30.5239
96.4480
28.8641
248856633014111110
99.0991
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
83.4015
72.2892
98.5507
28.8660
60236811
100.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
83.4015
72.2892
98.5507
28.8660
60236811
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
74.2193
59.3086
99.1453
28.8754
4049277837123227
84.3750
ckim-isaacINDELI6_15*hetalt
81.9509
69.9567
98.9089
28.8855
5982256959836652
78.7879
gduggal-snapplatSNPtifunc_cds*
99.5243
99.4052
99.6437
28.8978
137058213705495
10.2041
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.8976
99.7954
28.9038
39024390381
12.5000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4144
93.0885
99.9868
28.9050
7502557755011
100.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4144
93.0885
99.9868
28.9050
7502557755011
100.0000
hfeng-pmm1SNPtvfunc_cdshet
99.8871
99.9247
99.8495
28.9115
26552265440
0.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.6942
93.6000
100.0000
28.9157
117811800
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5956
99.3947
99.7973
28.9459
246315246251
20.0000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5654
99.2416
99.8913
28.9575
916791911
100.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.2924
98.8082
99.7814
28.9596
9121191322
100.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.8006
90.6323
99.3707
28.9674
15481601579109
90.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5549
95.7315
99.4491
28.9744
771534477624341
95.3488
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5549
95.7315
99.4491
28.9744
771534477624341
95.3488
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.0806
98.1780
100.0000
28.9811
140126138700
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8976
99.8720
99.9231
28.9976
39015390032
66.6667
hfeng-pmm2SNPtvfunc_cds*
99.9200
100.0000
99.8401
29.0024
43710437070
0.0000
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.5808
93.9028
99.4161
29.0155
357323240862423
95.8333
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
82.2556
76.2295
89.3162
29.0192
93296277575
100.0000
bgallagher-sentieonSNPtvfunc_cds*
99.8287
100.0000
99.6579
29.0453
437104370150
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
29.0467
14270142721
50.0000
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
72.1429
56.4246
100.0000
29.0698
1017812200
ckim-gatkSNPtifunc_cds*
99.6887
99.8912
99.4870
29.0714
137721513770711
1.4085
eyeh-varpipeINDELI6_15HG002compoundhethetalt
42.7960
27.4218
97.4089
29.0841
2341619624066463
98.4375
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
gduggal-snapfbSNPtv*het
98.4503
99.7960
97.1404
29.1063
590497120759083917393571
3.2829
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.4697
91.8338
99.4055
29.1133
126401124127077675
98.6842
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8991
99.8789
99.9192
29.1154
24753247421
50.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3331
98.7166
99.9574
29.1176
469261468922
100.0000