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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21401-21450 / 86044 show all
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
72.8368
57.5419
99.2063
28.0000
1037612511
100.0000
gduggal-bwafbSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
28.0101
17040170400
jli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
90.6149
83.1470
99.5567
28.0153
1041211112355
100.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.0153
98.0498
100.0000
28.0159
9051890700
gduggal-snapfbSNPtv**
98.8423
99.7914
97.9112
28.0235
967675202396803620652782
3.7866
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.8708
82.4960
96.3134
28.0265
5632119516726439
60.9375
ciseli-customINDELI1_5func_cds*
86.4865
88.8889
84.2105
28.0303
160201603019
63.3333
gduggal-snapplatSNPtvHG002complexvarhet
96.9038
96.2928
97.5225
28.0304
14514655881455273697526
14.2278
eyeh-varpipeINDELD16_PLUSHG002compoundhet*
28.2801
22.7680
37.3134
28.0307
5331808525882881
99.8866
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
94.7121
90.9707
98.7745
28.0423
4034040354
80.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4004
63.2326
99.7503
28.0442
5168300551931313
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
49.2494
39.3734
65.7385
28.0488
465716543283280
98.9399
gduggal-snapfbSNPtifunc_cdshet
99.6775
99.9530
99.4036
28.0582
850048500511
1.9608
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
74.2610
59.0596
100.0000
28.0702
51535712300
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0455
94.6164
99.6025
28.0867
773344077683129
93.5484
gduggal-bwaplatSNPti*het
98.9567
98.3966
99.5232
28.0886
12613372055412619236046762
12.6034
ndellapenna-hhgaSNPtvfunc_cds*
99.9314
99.9771
99.8857
28.0901
43701437050
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.6249
85.0636
99.2832
28.0928
80314183166
100.0000
ghariani-varprowlSNPtifunc_cds*
99.6201
99.8549
99.3864
28.0976
137672013767859
10.5882
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3478
98.9177
99.7817
28.1005
457545711
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
77.8607
63.7475
100.0000
28.1116
31317833500
ckim-isaacSNPtiHG002complexvarhetalt
92.7461
86.4734
100.0000
28.1124
1792817900
jli-customSNPtvfunc_cds*
99.8629
99.9771
99.7489
28.1332
437014370110
0.0000
ckim-dragenSNPtifunc_cds*
99.6097
99.9637
99.2582
28.1352
137825137821031
0.9709
gduggal-bwavardSNPtifunc_cds*
99.3703
99.0716
99.6707
28.1478
13659128136224515
33.3333
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8385
93.8823
99.9870
28.1495
7673500771010
0.0000
egarrison-hhgaINDELD6_15HG002compoundhethetalt
65.0591
48.4726
98.9014
28.1522
3951420035113934
87.1795
gduggal-snapplatSNPti*het
98.9857
98.8246
99.1474
28.1840
1266829150681267456108991576
14.4600
hfeng-pmm3SNPtvfunc_cds*
99.9428
99.9771
99.9085
28.1938
43701436940
0.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9337
94.0758
99.9706
28.2016
6749425679321
50.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.4263
79.6804
99.3289
28.2061
174544519241311
84.6154
ciseli-customINDELI6_15HG002compoundhethomalt
0.8094
32.2581
0.4098
28.2142
10211024302370
97.5309
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0365
94.6613
99.5340
28.2145
679138368353230
93.7500
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0877
94.7254
99.5709
28.2155
13038726132265756
98.2456
ckim-gatkINDELI6_15HG002compoundhethetalt
95.9864
92.3041
99.9748
28.2337
7880657792122
100.0000
ghariani-varprowlSNP**het
99.0974
99.8581
98.3482
28.2380
18709072659187129431430431
1.3713
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.2475
116319116566
100.0000
gduggal-bwavardSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.5181
97.1512
99.9239
28.2478
266078262721
50.0000
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1037
98.2234
100.0000
28.2542
116121116300
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.7973
86.7868
95.1964
28.2652
11561765767291281
96.5636
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1540
92.9308
99.6088
28.2869
12791973129855151
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1462
92.9163
99.6087
28.2901
12789975129835151
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6750
99.5671
99.7831
28.3048
460246011
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2854
93.2411
99.5352
28.3262
976770898504646
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2751
93.2220
99.5351
28.3303
976571098484646
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.3354
116319116566
100.0000
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1839
94.9785
99.4942
28.3420
9949526100325150
98.0392
gduggal-snapfbSNP*func_cds*
99.6978
99.9614
99.4355
28.3431
181437181431032
1.9418
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5662
99.3506
99.7826
28.3489
459345911
100.0000