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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21351-21400 / 86044 show all
gduggal-bwafbSNPtifunc_cds*
99.6673
99.9492
99.3869
27.6810
13780713780852
2.3529
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
13.8298
27.6923
00138168
83.9506
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.4186
97.3773
99.4823
27.6981
115131115366
100.0000
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9446
92.7410
99.3774
27.6985
747458575024746
97.8723
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9446
92.7410
99.3774
27.6985
747458575024746
97.8723
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8510
98.2234
99.4867
27.7056
116121116366
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8903
99.8539
99.9268
27.7249
27344273022
100.0000
anovak-vgSNPtifunc_cds*
98.6277
98.0852
99.1763
27.7317
135232641348611279
70.5357
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.1891
97.1291
99.2726
27.7365
463513746403434
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
36.1705
94.9861
22.3385
27.7457
3411836312621171
92.7892
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1468
98.3080
100.0000
27.7467
116220116400
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8169
93.8695
99.9554
27.7467
6676436671832
66.6667
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.2746
89.5387
99.5395
27.7522
731885573493430
88.2353
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
82.4610
70.7692
98.7805
27.7533
46019048665
83.3333
ltrigg-rtg1SNPtvfunc_cdshet
99.0291
99.8118
98.2586
27.7763
265252652470
0.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
27.7778
1301300
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
84.0126
73.1844
98.6014
27.7778
1314814121
50.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2656
92.8000
100.0000
27.7778
116911700
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
50.0921
84.4720
35.6021
27.7883
13625136246246
100.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
27.8052
116319116566
100.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.1333
97.5422
98.7316
27.8079
38109638144941
83.6735
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7896
99.7197
99.8596
27.8116
14234142322
100.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3880
93.0278
100.0000
27.8191
4323324437200
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.4344
93.1143
100.0000
27.8227
3543262356700
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5348
93.8046
99.4286
27.8282
10417688104416059
98.3333
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
94.5148
89.6000
100.0000
27.8481
1121311400
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6759
93.5657
100.0000
27.8543
4348299439800
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
94.6237
89.7959
100.0000
27.8689
4454400
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
94.6237
89.7959
100.0000
27.8689
4454400
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
15.9091
27.8689
00147465
87.8378
rpoplin-dv42SNPtvfunc_cdshomalt
99.9706
99.9413
100.0000
27.8695
17031170300
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3478
98.9177
99.7817
27.8740
457545711
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3478
98.9177
99.7817
27.8740
457545711
100.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.4663
89.9219
99.4945
27.8754
645172364953328
84.8485
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.4520
98.9651
99.9438
27.8836
717275711144
100.0000
ndellapenna-hhgaINDELI6_15HG002compoundhethetalt
95.3870
91.6833
99.4026
27.8852
782771078204742
89.3617
raldana-dualsentieonSNPtvfunc_cds*
99.8743
99.9771
99.7716
27.8940
437014369100
0.0000
gduggal-bwafbINDELI6_15HG002compoundhet*
80.9656
72.6869
91.3725
27.9246
637923977403699688
98.4263
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
76.0845
61.4679
99.8214
27.9279
53633655911
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
45.2624
94.5183
29.7558
27.9326
5693358513811290
93.4106
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9287
94.3839
99.6144
27.9429
771445977503029
96.6667
hfeng-pmm1SNPtvfunc_cds*
99.9314
99.9542
99.9085
27.9499
43692436840
0.0000
ckim-isaacSNPtvtech_badpromoters*
94.9640
91.6667
98.5075
27.9570
6666610
0.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.8598
99.9299
27.9657
14252142610
0.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6360
99.4350
99.8379
27.9708
246414246340
0.0000
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.3614
98.7310
100.0000
27.9729
116715116900
ckim-dragenSNPtv*het
99.7113
99.9417
99.4820
27.9772
5913513455915443080126
4.0909
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9771
94.5358
99.5479
27.9803
678239268263130
96.7742
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8458
93.1665
98.6838
27.9872
662648666738986
96.6292
ckim-isaacINDELD16_PLUSHG002compoundhet*
81.7142
76.1213
88.1941
27.9899
17825591763236205
86.8644