PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21301-21350 / 86044 show all
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7996
94.1873
99.5608
27.3684
675741768013030
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9841
96.0831
99.9618
27.3710
5225213523621
50.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7189
91.8273
99.9549
27.3874
4382390443122
100.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
84.9521
75.2294
97.5610
27.3958
6562166801717
100.0000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4989
93.2461
99.9869
27.4123
7621552765710
0.0000
jlack-gatkSNPtv**
99.5956
99.9388
99.2547
27.4223
9690975939690087276194
2.6663
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4212
93.4764
99.5575
27.4245
670646867503029
96.6667
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
79.6677
66.2895
99.8110
27.4375
48042443475499
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0210
94.2544
99.9549
27.4378
4380267443322
100.0000
hfeng-pmm1INDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
27.4510
7407400
gduggal-snapvardSNP**het
98.8907
98.9717
98.8098
27.4520
1854334192661842523221943216
14.4904
anovak-vgSNPtv*het
97.9352
98.2070
97.6649
27.4537
58109510609580225138734566
32.9129
ckim-vqsrSNPtv**
99.1585
98.4420
99.8855
27.4583
95458215108954496109457
5.2102
jli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6785
97.8849
99.4850
27.4595
115725115966
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
83.5892
71.9405
99.7391
27.4753
34331339344199
100.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7169
99.5157
99.9189
27.4838
246612246520
0.0000
gduggal-snapfbSNP*HG002compoundhethetalt
97.7828
99.7680
95.8751
27.4859
8602860378
21.6216
gduggal-snapfbSNPtvHG002compoundhethetalt
97.7828
99.7680
95.8751
27.4859
8602860378
21.6216
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
76.0747
61.6742
99.2486
27.4889
2866178129062222
100.0000
raldana-dualsentieonINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
76.1194
61.4458
100.0000
27.5000
51325800
jmaeng-gatkSNPtv**
99.5370
99.3842
99.6902
27.5023
9637195971963632299580
2.6711
ciseli-customSNP*func_cdshet
97.0747
99.2205
95.0198
27.5142
1107487110475794
0.6908
gduggal-bwafbSNPtv*het
99.6077
99.8543
99.3624
27.5297
5908428625909313792213
5.6171
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9434
94.0945
99.9703
27.5328
6692420673621
50.0000
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
86.5570
77.0950
98.6667
27.5362
1384114821
50.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
84.1727
99.6274
72.8688
27.5370
722027739427532746
99.7457
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
82.7698
70.8758
99.4609
27.5391
34814336922
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
82.7698
70.8758
99.4609
27.5391
34814336922
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0075
95.3292
98.7460
27.5468
518425451976664
96.9697
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3492
99.1342
99.5652
27.5591
458445822
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.2341
94.6563
99.9563
27.5665
4517255457022
100.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6740
93.5880
99.9704
27.5688
6714460675821
50.0000
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.5907
97.6311
99.5693
27.5733
115428115655
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
97.5610
100.0000
95.2381
27.5862
2102011
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.2123
89.8860
98.9760
27.5881
488855051235348
90.5660
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7436
99.6160
99.8716
27.5888
389115389051
20.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
82.8388
70.8349
99.7415
27.5927
3852158638581010
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0467
94.6710
99.5447
27.5976
673337967773130
96.7742
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.1664
67.4653
98.7589
27.5995
53525855776
85.7143
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
85.1654
74.5662
99.2771
27.6058
16335571648129
75.0000
gduggal-bwafbINDELI16_PLUSHG002compoundhethet
28.9364
17.0213
96.4581
27.6068
8398173030
100.0000
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
69.1382
53.0726
99.1525
27.6074
958411711
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
78.8827
65.3768
99.4220
27.6151
32117034422
100.0000
jpowers-varprowlSNPtv**
99.3067
99.4773
99.1367
27.6192
964620506996486284021363
16.2223
cchapple-customSNPtiHG002compoundhethomalt
99.5445
99.1480
99.9443
27.6293
733163717344
100.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2933
93.2116
99.5857
27.6338
668748767312828
100.0000
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6785
97.8849
99.4850
27.6398
115725115966
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6785
97.8849
99.4850
27.6398
115725115966
100.0000
asubramanian-gatkSNPtifunc_cds*
99.6805
99.5721
99.7892
27.6472
137285913726291
3.4483