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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
21151-21200 / 86044 show all
qzeng-customSNPtv**
99.4379
99.2180
99.6588
26.4392
96211575839586193282549
16.7276
astatham-gatkINDELD16_PLUSHG002compoundhethetalt
97.0065
94.5539
99.5897
26.4429
1823105194288
100.0000
hfeng-pmm1INDELD16_PLUSHG002compoundhethetalt
96.7327
93.6722
100.0000
26.4571
1806122191800
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.5840
86.9698
98.9730
26.4574
96581447992610393
90.2913
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.2898
93.2880
99.4913
26.4604
507336550852621
80.7692
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5229
95.1931
99.9696
26.4607
6555331656821
50.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
21.5835
18.1202
26.6833
26.4895
214967214588544
92.5170
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3592
95.2372
99.5780
26.4946
517925951912222
100.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.2607
92.7910
100.0000
26.5013
4312335435700
dgrover-gatkINDELD16_PLUSHG002compoundhethetalt
97.0887
94.7095
99.5904
26.5237
1826102194588
100.0000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9212
94.7708
99.1715
26.5340
440424344293735
94.5946
ckim-dragenINDELD16_PLUSHG002compoundhethetalt
96.4348
93.5685
99.4824
26.5399
180412419221010
100.0000
ndellapenna-hhgaSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.5517
17040170400
jpowers-varprowlSNPtifunc_cds*
99.5285
99.5285
99.5285
26.5751
137226513722659
13.8462
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6789
94.2328
99.2552
26.5783
437926843983330
90.9091
qzeng-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
97.4026
94.9367
100.0000
26.5823
2251229000
asubramanian-gatkINDELD16_PLUSHG002compoundhethetalt
95.9105
93.3091
98.6612
26.6062
179912919162622
84.6154
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
40.1132
30.9859
56.8627
26.6187
4498584440
90.9091
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
48.0929
41.6667
56.8627
26.6187
1014584440
90.9091
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
93.1476
88.3677
98.4741
26.6190
608580162609790
92.7835
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
88.9406
86.2302
91.8269
26.6314
382613823433
97.0588
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779
eyeh-varpipeINDELD1_5tech_badpromotershomalt
90.0000
100.0000
81.8182
26.6667
90922
100.0000
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
64.6644
48.0447
98.8636
26.6667
86938711
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
93.6170
88.0000
100.0000
26.6667
2232200
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
93.6170
88.0000
100.0000
26.6667
2232200
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7545
99.6496
99.8596
26.6735
14225142222
100.0000
ckim-dragenSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.6781
17040170400
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.4799
95.1964
99.8756
26.6788
6421324642387
87.5000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3667
93.0278
99.9543
26.6834
4323324437522
100.0000
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
86.3984
76.3713
99.4565
26.6932
1815618311
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
78.5748
67.1057
94.7725
26.6989
18348995602309300
97.0874
qzeng-customSNPtifunc_cds*
99.7894
99.8622
99.7168
26.7032
137681913732394
10.2564
asubramanian-gatkSNPtv*het
98.8211
97.8557
99.8057
26.7081
57900812688578944112742
3.7267
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
98.4617
97.0748
99.8889
26.7101
8962789911
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
98.4617
97.0748
99.8889
26.7101
8962789911
100.0000
ltrigg-rtg2INDELI1_5func_cds*
99.7230
100.0000
99.4475
26.7206
180018010
0.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4855
93.5742
99.5838
26.7211
665545766992828
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8156
94.2210
99.5572
26.7488
670141167453030
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8082
94.2070
99.5571
26.7517
670041267443030
100.0000
eyeh-varpipeSNPtifunc_cdshet
98.8564
99.9647
97.7724
26.7528
8501384271921
0.5208
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
ltrigg-rtg2SNPtvfunc_cds*
99.5213
99.8856
99.1597
26.7631
436654366370
0.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.6055
95.7176
99.5693
26.7854
782335078603432
94.1176
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4185
93.4618
99.5685
26.7894
664746566912929
100.0000
ciseli-customSNPtv*het
95.4085
98.2395
92.7361
26.7935
5812871041758058345476409
0.8994
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
86.5391
76.3934
99.7924
26.7984
35501097144233
100.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7738
99.5485
100.0000
26.8007
441243700
ckim-gatkSNP**het
99.6800
99.6561
99.7039
26.8036
1867144644318670215544194
3.4993
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
82.8097
70.7958
99.7345
26.8052
4875201148831313
100.0000