PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20951-21000 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.0000 | 236 | 1 | 237 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.0000 | 236 | 1 | 237 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 25.0000 | 45 | 4 | 45 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 92.3077 | 85.7143 | 100.0000 | 25.0000 | 42 | 7 | 42 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 77.2179 | 65.3061 | 94.4444 | 25.0000 | 32 | 17 | 17 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 85.9670 | 76.8000 | 97.6190 | 25.0000 | 96 | 29 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.2230 | 56.8228 | 99.0741 | 25.0000 | 279 | 212 | 107 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | HG002compoundhet | hetalt | 99.9052 | 99.8840 | 99.9265 | 25.0046 | 861 | 1 | 4079 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | func_cds | het | 99.9118 | 99.9647 | 99.8590 | 25.0066 | 8501 | 3 | 8499 | 12 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | func_cds | homalt | 98.9685 | 98.7676 | 99.1701 | 25.0222 | 1683 | 21 | 1673 | 14 | 11 | 78.5714 | |
| jmaeng-gatk | SNP | ti | * | het | 99.6655 | 99.6418 | 99.6893 | 25.0371 | 1277299 | 4592 | 1277249 | 3981 | 127 | 3.1902 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | hetalt | 95.8824 | 94.5476 | 97.2554 | 25.0447 | 815 | 47 | 815 | 23 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.1166 | 93.5100 | 98.8728 | 25.0680 | 7622 | 529 | 7631 | 87 | 83 | 95.4023 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6017 | 95.6643 | 99.6192 | 25.0742 | 6531 | 296 | 6540 | 25 | 24 | 96.0000 | |
| ckim-dragen | SNP | tv | * | * | 99.8136 | 99.9495 | 99.6782 | 25.0811 | 969200 | 490 | 969499 | 3130 | 164 | 5.2396 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9410 | 92.7025 | 99.4141 | 25.1041 | 6593 | 519 | 6617 | 39 | 38 | 97.4359 | |
| jpowers-varprowl | SNP | * | * | het | 99.3161 | 99.3290 | 99.3033 | 25.1238 | 1861010 | 12572 | 1861335 | 13059 | 459 | 3.5148 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5390 | 95.2102 | 99.9846 | 25.1466 | 6500 | 327 | 6509 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.6853 | 87.1155 | 99.0159 | 25.1484 | 7052 | 1043 | 7244 | 72 | 68 | 94.4444 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0766 | 94.3658 | 99.9478 | 25.1564 | 3802 | 227 | 3827 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | homalt | 2.4742 | 66.6667 | 1.2605 | 25.1572 | 2 | 1 | 3 | 235 | 234 | 99.5745 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3117 | 93.2057 | 99.6319 | 25.1721 | 7545 | 550 | 7579 | 28 | 28 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | * | 97.3488 | 95.7603 | 98.9909 | 25.1801 | 235716 | 10436 | 235930 | 2405 | 362 | 15.0520 | |
| ciseli-custom | SNP | tv | * | * | 96.5740 | 98.6920 | 94.5451 | 25.2127 | 957014 | 12684 | 954909 | 55095 | 4019 | 7.2947 | |
| ghariani-varprowl | SNP | * | * | * | 99.3496 | 99.8685 | 98.8361 | 25.2137 | 3050577 | 4016 | 3051086 | 35930 | 2639 | 7.3448 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | * | 66.9443 | 57.2812 | 80.5291 | 25.2164 | 5027 | 3749 | 5844 | 1413 | 1393 | 98.5846 | |
| ghariani-varprowl | SNP | ti | * | het | 99.3626 | 99.8721 | 98.8582 | 25.2183 | 1280237 | 1639 | 1280417 | 14789 | 277 | 1.8730 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5302 | 93.3045 | 99.9868 | 25.2315 | 7553 | 542 | 7588 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.2366 | 236 | 1 | 237 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1938 | 95.0545 | 99.4316 | 25.2614 | 4536 | 236 | 4548 | 26 | 26 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.7409 | 92.2945 | 99.4545 | 25.2717 | 539 | 45 | 547 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.8699 | 68.4318 | 98.8338 | 25.2723 | 336 | 155 | 339 | 4 | 4 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 95.0565 | 90.9751 | 99.5213 | 25.2782 | 1754 | 174 | 1871 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | SNP | tv | * | het | 98.0748 | 99.9564 | 96.2628 | 25.2886 | 591446 | 258 | 583371 | 22648 | 112 | 0.4945 | |
| asubramanian-gatk | SNP | tv | func_cds | homalt | 99.7352 | 99.4718 | 100.0000 | 25.3304 | 1695 | 9 | 1695 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | HG002complexvar | * | 98.7938 | 99.5787 | 98.0211 | 25.3464 | 245118 | 1037 | 245440 | 4955 | 529 | 10.6761 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8949 | 94.4670 | 99.4508 | 25.3587 | 6505 | 381 | 6519 | 36 | 36 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5615 | 93.9687 | 99.3014 | 25.3607 | 3786 | 243 | 4264 | 30 | 29 | 96.6667 | |