PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20801-20850 / 86044 show all | |||||||||||||||
jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7859 | 91.9518 | 99.9537 | 23.9402 | 4273 | 374 | 4322 | 2 | 2 | 100.0000 | |
ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 23.9437 | 51 | 0 | 54 | 0 | 0 | ||
raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | SNP | ti | func_cds | het | 99.9236 | 99.9530 | 99.8942 | 23.9564 | 8500 | 4 | 8498 | 9 | 2 | 22.2222 | |
hfeng-pmm1 | SNP | * | func_cds | het | 99.9015 | 99.9462 | 99.8567 | 23.9755 | 11155 | 6 | 11152 | 16 | 0 | 0.0000 | |
ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.6252 | 83.1422 | 99.5885 | 23.9833 | 725 | 147 | 726 | 3 | 3 | 100.0000 | |
gduggal-bwafb | SNP | * | * | het | 99.6957 | 99.8616 | 99.5303 | 23.9839 | 1871007 | 2594 | 1871215 | 8830 | 595 | 6.7384 | |
ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.0000 | 90.4762 | 100.0000 | 24.0000 | 19 | 2 | 19 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1701 | 95.0166 | 99.4235 | 24.0070 | 5167 | 271 | 5174 | 30 | 29 | 96.6667 | |
anovak-vg | SNP | * | * | het | 98.0636 | 98.0936 | 98.0337 | 24.0083 | 1837883 | 35718 | 1828909 | 36684 | 13178 | 35.9230 | |
raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5198 | 93.2738 | 100.0000 | 24.0209 | 3758 | 271 | 3783 | 0 | 0 | ||
egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.5228 | 98.3122 | 98.7342 | 24.0385 | 233 | 4 | 234 | 3 | 3 | 100.0000 | |
jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 24.0385 | 235 | 2 | 237 | 0 | 0 | ||
ciseli-custom | SNP | ti | func_cds | * | 98.7839 | 99.4488 | 98.1278 | 24.0438 | 13711 | 76 | 13680 | 261 | 31 | 11.8774 | |
hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.8362 | 93.8781 | 99.9869 | 24.0528 | 7652 | 499 | 7656 | 1 | 0 | 0.0000 | |
jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5549 | 93.6940 | 99.5959 | 24.0546 | 7637 | 514 | 7641 | 31 | 31 | 100.0000 | |
gduggal-bwafb | SNP | * | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
gduggal-bwafb | SNP | tv | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.1178 | 74.4266 | 99.3958 | 24.0826 | 649 | 223 | 658 | 4 | 4 | 100.0000 | |
ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0246 | 94.5657 | 99.6148 | 24.0847 | 6456 | 371 | 6465 | 25 | 25 | 100.0000 | |
jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.0672 | 96.6017 | 99.5778 | 24.0929 | 6595 | 232 | 6604 | 28 | 27 | 96.4286 | |
ciseli-custom | SNP | tv | HG002complexvar | het | 94.7007 | 95.5637 | 93.8531 | 24.0959 | 144047 | 6687 | 143323 | 9387 | 273 | 2.9083 | |
jpowers-varprowl | SNP | tv | * | homalt | 99.7396 | 99.9576 | 99.5225 | 24.1122 | 376963 | 160 | 377038 | 1809 | 1197 | 66.1692 | |
bgallagher-sentieon | SNP | ti | func_cds | het | 99.8707 | 99.9647 | 99.7769 | 24.1158 | 8501 | 3 | 8499 | 19 | 0 | 0.0000 | |
jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.2100 | 97.1081 | 99.3372 | 24.1239 | 4634 | 138 | 4646 | 31 | 30 | 96.7742 | |
ckim-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.9335 | 94.4301 | 99.5733 | 24.1244 | 7697 | 454 | 7701 | 33 | 33 | 100.0000 | |
ckim-vqsr | INDEL | D6_15 | HG002compoundhet | hetalt | 96.9271 | 94.4179 | 99.5733 | 24.1268 | 7696 | 455 | 7700 | 33 | 33 | 100.0000 | |
cchapple-custom | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.1656 | 1704 | 0 | 1704 | 0 | 0 | ||
gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 85.9762 | 77.6671 | 96.2761 | 24.1736 | 546 | 157 | 1060 | 41 | 41 | 100.0000 | |
bgallagher-sentieon | SNP | * | func_cds | * | 99.8899 | 99.9669 | 99.8129 | 24.1761 | 18144 | 6 | 18141 | 34 | 0 | 0.0000 | |
eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.3061 | 95.4603 | 99.2248 | 24.1920 | 757 | 36 | 768 | 6 | 6 | 100.0000 | |
astatham-gatk | SNP | ti | func_cds | het | 99.8234 | 99.7178 | 99.9293 | 24.2094 | 8480 | 24 | 8478 | 6 | 0 | 0.0000 | |
ckim-isaac | SNP | * | tech_badpromoters | homalt | 94.7368 | 90.0000 | 100.0000 | 24.2105 | 72 | 8 | 72 | 0 | 0 | ||
eyeh-varpipe | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 24.2105 | 72 | 2 | 72 | 0 | 0 | ||
jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.4972 | 93.5639 | 99.6204 | 24.2463 | 7574 | 521 | 7610 | 29 | 29 | 100.0000 | |
gduggal-bwaplat | SNP | ti | * | * | 99.0047 | 98.3196 | 99.6994 | 24.2468 | 2050467 | 35044 | 2050804 | 6183 | 880 | 14.2326 | |
dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6390 | 96.2169 | 99.1037 | 24.2483 | 763 | 30 | 774 | 7 | 6 | 85.7143 | |
hfeng-pmm2 | SNP | * | func_cds | * | 99.9174 | 99.9780 | 99.8569 | 24.2548 | 18146 | 4 | 18143 | 26 | 0 | 0.0000 | |
astatham-gatk | SNP | * | func_cds | * | 99.8621 | 99.7796 | 99.9448 | 24.2600 | 18110 | 40 | 18107 | 10 | 0 | 0.0000 | |
ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.8395 | 96.2110 | 99.5241 | 24.2691 | 3758 | 148 | 3764 | 18 | 7 | 38.8889 | |
ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 24.2713 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.3167 | 94.8139 | 99.9552 | 24.2743 | 4406 | 241 | 4459 | 2 | 2 | 100.0000 | |
bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9389 | 94.3899 | 99.6295 | 24.2810 | 6444 | 383 | 6453 | 24 | 24 | 100.0000 | |
bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 24.2812 | 236 | 1 | 237 | 0 | 0 | ||
asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 24.2857 | 50 | 1 | 53 | 0 | 0 | ||
gduggal-snapvard | INDEL | * | func_cds | homalt | 88.1855 | 79.2035 | 99.4652 | 24.2915 | 179 | 47 | 186 | 1 | 1 | 100.0000 | |
ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3320 | 62.0112 | 99.2537 | 24.2938 | 111 | 68 | 133 | 1 | 1 | 100.0000 | |
ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3320 | 62.0112 | 99.2537 | 24.2938 | 111 | 68 | 133 | 1 | 1 | 100.0000 |