PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20651-20700 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 22.8700 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 22.8700 | 860 | 2 | 860 | 0 | 0 | ||
| ckim-gatk | SNP | * | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| ckim-gatk | SNP | tv | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | HG002complexvar | homalt | 99.9769 | 99.9643 | 99.9895 | 22.8756 | 95077 | 34 | 95069 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | homalt | 99.8464 | 99.8065 | 99.8864 | 22.8760 | 94927 | 184 | 94935 | 108 | 97 | 89.8148 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | ti | func_cds | het | 99.8825 | 99.9530 | 99.8121 | 22.8972 | 8500 | 4 | 8500 | 16 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | * | * | 99.3249 | 99.0431 | 99.6083 | 22.9016 | 3025405 | 29229 | 3004827 | 11817 | 3477 | 29.4237 | |
| ckim-isaac | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 22.9167 | 37 | 4 | 37 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | HG002complexvar | * | 97.9967 | 97.4708 | 98.5284 | 22.9400 | 735305 | 19080 | 736073 | 10994 | 1866 | 16.9729 | |
| hfeng-pmm1 | SNP | tv | HG002complexvar | homalt | 99.9763 | 99.9664 | 99.9863 | 22.9407 | 95079 | 32 | 95072 | 13 | 11 | 84.6154 | |
| ckim-dragen | SNP | tv | HG002complexvar | homalt | 99.9600 | 99.9306 | 99.9895 | 22.9484 | 95045 | 66 | 95148 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | hetalt | 99.5663 | 99.1364 | 100.0000 | 22.9530 | 574 | 5 | 574 | 0 | 0 | ||
| ciseli-custom | SNP | * | * | het | 97.1375 | 98.3979 | 95.9090 | 22.9747 | 1843584 | 30017 | 1837235 | 78367 | 939 | 1.1982 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7416 | 96.3077 | 99.2188 | 22.9844 | 626 | 24 | 635 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 22.9917 | 235 | 2 | 278 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | HG002complexvar | homalt | 99.8685 | 99.7960 | 99.9410 | 22.9952 | 94917 | 194 | 94931 | 56 | 49 | 87.5000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.2093 | 77.3196 | 100.0000 | 23.0000 | 75 | 22 | 77 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | het | 92.7842 | 87.3832 | 98.8969 | 23.0186 | 748 | 108 | 7531 | 84 | 67 | 79.7619 | |
| jmaeng-gatk | SNP | tv | HG002complexvar | homalt | 99.2171 | 98.4618 | 99.9840 | 23.0284 | 93648 | 1463 | 93634 | 15 | 13 | 86.6667 | |
| hfeng-pmm2 | SNP | tv | HG002complexvar | homalt | 99.9732 | 99.9664 | 99.9800 | 23.0303 | 95079 | 32 | 95074 | 19 | 13 | 68.4211 | |
| ckim-gatk | SNP | tv | HG002complexvar | homalt | 99.2138 | 98.4513 | 99.9883 | 23.0317 | 93638 | 1473 | 93624 | 11 | 8 | 72.7273 | |
| asubramanian-gatk | SNP | * | * | het | 98.9725 | 98.1066 | 99.8538 | 23.0377 | 1838113 | 35474 | 1837999 | 2691 | 109 | 4.0505 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | hetalt | 99.3043 | 98.6183 | 100.0000 | 23.0458 | 571 | 8 | 571 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.2250 | 84.5061 | 99.1045 | 23.0475 | 3927 | 720 | 3984 | 36 | 30 | 83.3333 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 62.5767 | 48.0000 | 89.8678 | 23.0508 | 312 | 338 | 204 | 23 | 21 | 91.3043 | |
| rpoplin-dv42 | SNP | ti | func_cds | * | 99.9420 | 99.9492 | 99.9347 | 23.0636 | 13780 | 7 | 13778 | 9 | 2 | 22.2222 | |
| jli-custom | SNP | tv | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| jli-custom | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | * | het | 99.8318 | 99.9594 | 99.7045 | 23.0898 | 591456 | 240 | 591385 | 1753 | 53 | 3.0234 | |
| dgrover-gatk | SNP | ti | func_cds | * | 99.9347 | 99.9565 | 99.9130 | 23.1014 | 13781 | 6 | 13779 | 12 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9530 | 95.0769 | 98.9045 | 23.1047 | 618 | 32 | 632 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.9009 | 96.6154 | 99.2212 | 23.1138 | 628 | 22 | 637 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | homalt | 99.9713 | 99.9427 | 100.0000 | 23.1405 | 6975 | 4 | 6975 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 23.1579 | 73 | 1 | 73 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | func_cds | het | 99.9236 | 99.9647 | 99.8825 | 23.1721 | 8501 | 3 | 8501 | 10 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | HG002complexvar | het | 99.0228 | 98.2997 | 99.7567 | 23.1864 | 148171 | 2563 | 146790 | 358 | 101 | 28.2123 | |
| gduggal-bwavard | SNP | tv | HG002complexvar | het | 98.2582 | 97.4538 | 99.0760 | 23.1907 | 146896 | 3838 | 144431 | 1347 | 888 | 65.9243 | |
| hfeng-pmm2 | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.2143 | 860 | 2 | 860 | 0 | 0 | ||