PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
20551-20600 / 86044 show all
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
22.2222
2102100
anovak-vgINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
22.2222
71700
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.8966
96.4615
99.3750
22.2357
6272363644
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.8966
96.4615
99.3750
22.2357
6272363644
100.0000
dgrover-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.2372
577257700
ckim-gatkSNPtiHG002compoundhethetalt
98.8646
97.7547
100.0000
22.2527
5661356600
jmaeng-gatkSNPtvHG002complexvarhet
99.6867
99.4221
99.9526
22.2557
1498608711497827116
22.5352
ckim-dragenSNPtvHG002complexvarhet
99.9058
99.9098
99.9019
22.2740
15059513615074014870
47.2973
gduggal-bwaplatSNP*func_cdshomalt
99.5972
99.1976
100.0000
22.2746
692356692300
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
ckim-isaacINDELI1_5func_cdshomalt
98.2906
96.6387
100.0000
22.2973
115411500
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
45.0912
56.0811
37.7029
22.3084
8365302499460
92.1844
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
ndellapenna-hhgaSNP*func_cdshomalt
99.9857
99.9713
100.0000
22.3138
69772697700
astatham-gatkSNPtvHG002complexvar*
99.1122
98.2547
99.9847
22.3181
24185642962417693721
56.7568
ghariani-varprowlSNP*HG002complexvarhet
99.2312
99.6262
98.8393
22.3346
46375217404640235449138
2.5326
gduggal-bwavardSNPtvHG002complexvar*
98.2474
97.1213
99.3998
22.3354
23906970862343431415923
65.2297
gduggal-snapvardSNP*HG002complexvarhet
97.7612
96.9682
98.5672
22.3358
4513861411343932463862268
35.5152
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6279
93.5220
99.9473
22.3450
3768261379322
100.0000
gduggal-bwavardINDELD1_5func_cdshomalt
94.2857
89.1892
100.0000
22.3529
6686600
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
88.8394
80.5907
98.9691
22.4000
1914619221
50.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
32.7901
97.1831
19.7222
22.4138
69271289266
92.0415
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2567
92.7835
100.0000
22.4138
9079000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
jlack-gatkSNP*HG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
jlack-gatkSNPtvHG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
26.7835
20.7451
37.7805
22.4371
245936303499460
92.1844
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5768
95.8462
99.3711
22.4390
6232763244
100.0000
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
ckim-vqsrSNPtvHG002complexvarhet
98.9859
98.0150
99.9763
22.4456
14773929921476623514
40.0000
hfeng-pmm3SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
jli-customSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
84.0574
73.1400
98.8060
22.4537
58021333144
100.0000
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
astatham-gatkSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
22.5000
9349300
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
22.5000
9349300
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
22.5000
9349300
egarrison-hhgaSNP*func_cdshomalt
99.9857
99.9713
100.0000
22.5036
69772697700