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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
20501-20550 / 86044 show all
astatham-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
21.9215
577257700
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.8213
96.4615
99.2200
21.9245
6272363654
80.0000
eyeh-varpipeSNP*func_cdshomalt
99.9857
99.9713
100.0000
21.9335
69772688000
eyeh-varpipeSNP**het
99.1531
99.9599
98.3592
21.9487
1872850751183747130653277
0.9037
qzeng-customSNPtiHG002compoundhethetalt
98.4211
96.8912
100.0000
21.9547
5611855100
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
astatham-gatkSNPtvHG002complexvarhet
98.5778
97.2116
99.9829
21.9634
14652842031464562511
44.0000
qzeng-customSNP*HG002compoundhethetalt
98.5292
97.2158
99.8786
21.9697
8382482311
100.0000
qzeng-customSNPtvHG002compoundhethetalt
98.5292
97.2158
99.8786
21.9697
8382482311
100.0000
gduggal-snapfbSNP*HG002complexvarhet
98.8655
99.5639
98.1768
21.9725
46347020304642358621899
10.4280
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
91.7858
86.9565
97.1831
21.9780
1402113844
100.0000
ciseli-customINDELD1_5func_cdshomalt
96.5517
94.5946
98.5915
21.9780
7047010
0.0000
jli-customSNPtvHG002complexvar*
99.9252
99.8822
99.9683
21.9781
2458622902457917833
42.3077
gduggal-bwafbSNP***
99.7820
99.8619
99.7021
21.9848
3050417421730506569115775
8.5025
hfeng-pmm3SNP*func_cdshomalt
99.9928
99.9857
100.0000
21.9899
69781697800
gduggal-bwaplatSNPtiHG002compoundhethetalt
95.9569
92.2280
100.0000
21.9941
5344553200
mlin-fermikitSNPtvfunc_cdshet
99.1679
98.6827
99.6579
21.9982
262235262290
0.0000
eyeh-varpipeSNP*HG002compoundhethetalt
99.9219
99.8840
99.9599
21.9998
8611747832
66.6667
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
ltrigg-rtg2INDELD16_PLUSHG002compoundhethetalt
95.9722
92.7905
99.3799
22.0220
178913917631111
100.0000
ckim-dragenSNP*HG002compoundhethetalt
99.8839
99.7680
100.0000
22.0308
860286000
ckim-dragenSNPtvHG002compoundhethetalt
99.8839
99.7680
100.0000
22.0308
860286000
mlin-fermikitSNPtvHG002complexvar*
98.1368
97.0653
99.2323
22.0366
238931722423886118481739
94.1017
hfeng-pmm2SNPtv*het
99.8886
99.8560
99.9212
22.0414
59084485259077046618
3.8627
hfeng-pmm2SNP*func_cdshomalt
99.9928
99.9857
100.0000
22.0422
69781697800
eyeh-varpipeSNPtiHG002complexvarhetalt
99.6433
99.5169
99.7701
22.0458
206160751413
92.8571
gduggal-bwaplatSNPtv*homalt
98.6202
97.3009
99.9757
22.0523
366944101793668718982
92.1348
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
38.8186
25.0000
86.7925
22.0588
6184677
100.0000
hfeng-pmm1SNP*func_cdshomalt
99.9928
99.9857
100.0000
22.0596
69781697800
ghariani-varprowlSNP*HG002complexvar*
99.3539
99.7064
99.0038
22.0629
752159221575254975721579
20.8531
raldana-dualsentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
raldana-dualsentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
dgrover-gatkSNPtvHG002complexvar*
99.9486
99.9236
99.9736
22.0729
2459641882458736532
49.2308
astatham-gatkSNPtv**
99.5449
99.1184
99.9751
22.0764
961141854996105923961
25.5230
ltrigg-rtg1SNP*func_cdshomalt
99.9857
99.9713
100.0000
22.0795
69772697700
gduggal-snapplatSNPtiHG002compoundhethetalt
97.1675
94.8187
99.6357
22.1277
5493054722
100.0000
asubramanian-gatkSNPtvHG002complexvarhet
98.1875
96.4619
99.9759
22.1458
14539853331453293510
28.5714
rpoplin-dv42SNP*HG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
rpoplin-dv42SNPtvHG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8132
93.8694
99.9475
22.1609
3782247380922
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
raldana-dualsentieonSNPtv*het
99.8532
99.8447
99.8617
22.1748
59077791959070381822
2.6895
ckim-gatkSNPtvHG002complexvarhet
99.7094
99.4639
99.9560
22.1876
1499238081498456619
28.7879
ltrigg-rtg1INDELD16_PLUSHG002compoundhethetalt
94.9583
90.9232
99.3682
22.2073
175317517301111
100.0000
gduggal-bwafbINDELI6_15HG002compoundhethet
78.5751
65.8654
97.3628
22.2080
137715907160152
95.0000
ciseli-customSNP*func_cdshomalt
99.2844
99.8567
98.7187
22.2148
69691069349038
42.2222
eyeh-varpipeINDELI6_15func_cdshomalt
96.5517
93.3333
100.0000
22.2222
1411400
jmaeng-gatkSNPtiHG002compoundhethetalt
98.9529
97.9275
100.0000
22.2222
5671256700