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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 406 407 408 409 410 411 412 413 414 ... 1720 1721 » 20451-20500 / 86044 show all
raldana-dualsentieon	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.4966	577	2	577	0	0
ciseli-custom	SNP	*	*	*	97.7648	98.8356	96.7169	21.5138	3019065	35569	3006072	102041	11838	11.6012
cchapple-custom	SNP	tv	HG002complexvar	het	99.7615	99.6630	99.8602	21.5432	150223	508	149954	210	146	69.5238
gduggal-bwafb	SNP	tv	*	homalt	99.9109	99.8520	99.9697	21.5631	376565	558	376579	114	64	56.1404
dgrover-gatk	SNP	tv	HG002complexvar	het	99.9396	99.9138	99.9655	21.5720	150601	130	150525	52	21	40.3846
ckim-dragen	SNP	ti	HG002compoundhet	hetalt	99.9136	99.8273	100.0000	21.5739	578	1	578	0	0
ckim-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.5790	6963	16	6963	0	0
gduggal-bwafb	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	21.6059	5272	3	5272	0	0
ckim-vqsr	SNP	*	func_cds	homalt	99.7774	99.5558	100.0000	21.6155	6948	31	6948	0	0
ghariani-varprowl	SNP	*	HG002complexvar	homalt	99.6051	99.9428	99.2696	21.6199	288407	165	288526	2123	1441	67.8756
jmaeng-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.6496	6963	16	6963	0	0
gduggal-bwaplat	SNP	*	HG002complexvar	het	97.5069	96.6621	98.3666	21.6545	449959	15538	450835	7486	872	11.6484
hfeng-pmm2	SNP	tv	*	*	99.9268	99.9066	99.9471	21.6564	968784	906	968705	513	42	8.1871
ckim-gatk	SNP	ti	*	*	99.6817	99.5154	99.8485	21.6609	2075404	10107	2075345	3148	170	5.4003
ltrigg-rtg1	SNP	ti	func_cds	het	99.6011	99.8471	99.3563	21.6630	8491	13	8490	55	1	1.8182
rpoplin-dv42	SNP	ti	HG002compoundhet	hetalt	99.9136	99.8273	100.0000	21.6802	578	1	578	0	0
hfeng-pmm1	SNP	tv	HG002complexvar	*	99.8458	99.7087	99.9833	21.6860	245435	717	245349	41	20	48.7805
ltrigg-rtg2	SNP	*	func_cds	homalt	99.9642	99.9284	100.0000	21.6932	6974	5	6974	0	0
hfeng-pmm2	SNP	tv	HG002complexvar	*	99.8387	99.7038	99.9739	21.6976	245423	729	245339	64	21	32.8125
ltrigg-rtg2	SNP	tv	HG002complexvar	*	99.8482	99.7705	99.9260	21.7021	245590	565	245834	182	72	39.5604
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	64.3676	52.1127	84.1584	21.7054	74	68	85	16	16	100.0000
hfeng-pmm1	SNP	ti	func_cds	*	99.9384	99.9637	99.9130	21.7209	13782	5	13780	12	0	0.0000
raldana-dualsentieon	SNP	tv	HG002complexvar	*	99.8458	99.7136	99.9784	21.7224	245447	705	245362	53	18	33.9623
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
cchapple-custom	SNP	ti	*	het	99.8339	99.8795	99.7883	21.7295	1280346	1545	1280384	2716	443	16.3108
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
gduggal-snapfb	SNP	*	HG002complexvar	*	99.1200	99.6105	98.6343	21.7486	751447	2938	752277	10416	1326	12.7304
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
jli-custom	SNP	ti	func_cds	*	99.9166	99.9492	99.8840	21.7559	13780	7	13780	16	0	0.0000
gduggal-snapplat	SNP	*	func_cds	homalt	99.7054	99.4269	99.9856	21.7587	6939	40	6939	1	1	100.0000
ltrigg-rtg2	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	21.7668	858	4	859	0	0
ltrigg-rtg2	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	21.7668	858	4	859	0	0
jpowers-varprowl	SNP	*	HG002complexvar	homalt	99.6393	99.9463	99.3342	21.7803	288419	155	288542	1934	1452	75.0776
jpowers-varprowl	SNP	ti	func_cds	homalt	99.9052	99.9431	99.8674	21.7810	5272	3	5272	7	7	100.0000
gduggal-bwavard	SNP	*	func_cds	homalt	99.5466	99.0973	100.0000	21.7886	6916	63	6874	0	0
gduggal-snapplat	SNP	ti	HG002complexvar	het	97.6877	97.4934	97.8828	21.8010	306876	7890	307493	6651	990	14.8850
ckim-vqsr	SNP	ti	*	*	99.3455	98.7474	99.9510	21.8102	2059387	26124	2059330	1009	89	8.8206
ckim-dragen	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	21.8438	6977	2	6977	0	0
bgallagher-sentieon	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.8453	576	3	576	0	0
ckim-dragen	SNP	*	*	*	99.8268	99.9524	99.7015	21.8489	3053166	1453	3053731	9143	533	5.8296
jmaeng-gatk	SNP	ti	*	*	99.6502	99.4959	99.8049	21.8521	2074998	10513	2074939	4056	178	4.3886
gduggal-snapvard	SNP	*	func_cds	homalt	99.5466	99.1259	99.9709	21.8523	6918	61	6875	2	2	100.0000
egarrison-hhga	SNP	tv	HG002complexvar	*	99.7884	99.6287	99.9487	21.8626	245238	914	245267	126	78	61.9048
ndellapenna-hhga	SNP	tv	HG002complexvar	*	99.7569	99.5881	99.9262	21.8704	245138	1014	245164	181	131	72.3757
jlack-gatk	SNP	ti	HG002compoundhet	hetalt	99.6534	99.3092	100.0000	21.8750	575	4	575	0	0
raldana-dualsentieon	SNP	ti	func_cds	*	99.8985	99.9565	99.8406	21.8782	13781	6	13779	22	0	0.0000
jli-custom	SNP	tv	*	het	99.8561	99.9410	99.7714	21.8920	591347	349	591292	1355	58	4.2804
rpoplin-dv42	SNP	tv	*	*	99.9512	99.9420	99.9604	21.8980	969128	562	969027	384	163	42.4479
bgallagher-sentieon	SNP	tv	*	*	99.8908	99.9655	99.8163	21.9055	969355	335	969269	1784	78	4.3722
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.4161	95.5385	99.3691	21.9212	621	29	630	4	4	100.0000

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