PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
20301-20350 / 86044 show all
anovak-vgINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
20.0000
00044
100.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
20.0000
00040
0.0000
hfeng-pmm1SNP*HG002complexvarhomalt
99.9818
99.9754
99.9882
20.0017
288503712884883432
94.1176
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
jmaeng-gatkSNP*HG002complexvarhomalt
99.3008
98.6263
99.9845
20.0307
28461039642845864439
88.6364
jpowers-varprowlSNP*HG002complexvarhet
99.3948
98.9553
99.8382
20.0313
4606324863460862747150
20.0803
ckim-gatkSNP*HG002complexvarhomalt
99.2945
98.6114
99.9870
20.0389
28456740072845433731
83.7838
hfeng-pmm2SNP*HG002complexvarhomalt
99.9776
99.9726
99.9827
20.0544
288495792884815044
88.0000
mlin-fermikitSNP*func_cdshomalt
99.5356
99.8137
99.2590
20.0683
69661369665248
92.3077
gduggal-bwafbSNP*HG002complexvar*
99.8109
99.7664
99.8554
20.0831
75262317627527831090464
42.5688
jlack-gatkSNPtv*homalt
99.9678
99.9488
99.9867
20.1040
3769301933769125030
60.0000
jmaeng-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1062
526510526500
ckim-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1183
526510526500
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
ckim-dragenSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.1424
52732527300
ckim-isaacSNPtifunc_cdshet
99.5275
99.0828
99.9763
20.1440
842678842620
0.0000
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
asubramanian-gatkSNPtifunc_cdshomalt
99.7244
99.4502
100.0000
20.1522
524629524600
ckim-vqsrSNPtifunc_cdshomalt
99.7910
99.5829
100.0000
20.1550
525322525300
astatham-gatkSNP**het
99.3521
98.7393
99.9725
20.1637
184996723620184984550895
18.7008
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892
mlin-fermikitSNPtv*homalt
98.8702
98.8876
98.8528
20.1908
372928419537292343284101
94.7551
gduggal-bwavardSNP*HG002complexvarhet
98.2730
97.3044
99.2610
20.1947
4529521254844165932882162
65.7543
gduggal-snapplatSNPtifunc_cdshomalt
99.7435
99.5071
99.9810
20.2128
524926524911
100.0000
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
asubramanian-gatkSNPtv*homalt
98.7491
97.5342
99.9946
20.2324
36782492993678102017
85.0000
ckim-dragenSNPti**
99.8327
99.9538
99.7120
20.2602
208454796420848166022378
6.2770
ltrigg-rtg2SNPtifunc_cdshomalt
99.9526
99.9052
100.0000
20.2844
52705527000
mlin-fermikitSNPtvHG002complexvarhet
98.0988
96.3081
99.9573
20.3091
1451695565145103629
14.5161
jmaeng-gatkSNPtv*homalt
99.5328
99.0793
99.9904
20.3157
37365134723736373623
63.8889
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
98.4293
96.9072
100.0000
20.3390
9439400
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
ciseli-customSNP*HG002complexvarhet
95.7970
95.7987
95.7952
20.3525
4459431955743953919293621
3.2188
asubramanian-gatkSNP*HG002complexvarhomalt
98.0724
96.2540
99.9608
20.3588
2777641081027774010923
21.1009
ckim-gatkSNPtv*homalt
99.5305
99.0738
99.9914
20.3623
37363034933736163219
59.3750
ckim-vqsrSNP*HG002complexvarhomalt
98.2744
96.6168
99.9900
20.3688
27881197632787872826
92.8571
anovak-vgSNP*func_cdshomalt
99.1150
98.8967
99.3342
20.4124
69027768634641
89.1304
eyeh-varpipeSNPtvHG002complexvarhet
99.6993
99.8812
99.5181
20.4147
15055517914248069071
10.2899
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
dgrover-gatkSNP**het
99.9216
99.9564
99.8868
20.4479
187277081718726452122144
6.7861
gduggal-bwavardSNPtifunc_cdshomalt
99.6099
99.2227
100.0000
20.4486
523441521300
gduggal-snapvardSNPtifunc_cdshomalt
99.6385
99.2986
99.9808
20.4816
523837521711
100.0000
qzeng-customSNP*func_cdshomalt
99.8779
99.8281
99.9278
20.5349
696712691853
60.0000
eyeh-varpipeSNPti*het
99.6284
99.9615
99.2976
20.5443
128140449312643368944171
1.9119
cchapple-customSNP*func_cdshomalt
99.9713
99.9427
100.0000
20.5695
69754697400
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
ckim-vqsrSNPtv*homalt
98.8369
97.7055
99.9948
20.5893
36847086533684561916
84.2105