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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 402 403 404 405 406 407 408 409 410 ... 1720 1721 » 20251-20300 / 86044 show all
ghariani-varprowl	SNP	ti	HG002complexvar	homalt	99.7133	99.9473	99.4805	19.5938	193359	102	193405	1010	705	69.8020
anovak-vg	SNP	*	HG002complexvar	homalt	98.2895	97.5091	99.0824	19.5966	281387	7188	273293	2531	2130	84.1565
ltrigg-rtg2	SNP	*	HG002complexvar	homalt	99.9218	99.8676	99.9761	19.6026	288192	382	288118	69	68	98.5507
gduggal-bwavard	SNP	*	HG002complexvar	*	98.3118	97.1354	99.5171	19.6107	732775	21610	712182	3456	2272	65.7407
bgallagher-sentieon	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.6954	5272	3	5272	0	0
gduggal-bwaplat	SNP	ti	HG002complexvar	het	97.7064	97.0801	98.3410	19.6959	305575	9191	306161	5165	589	11.4037
ciseli-custom	SNP	ti	*	*	98.3062	98.8974	97.7221	19.7040	2062524	22994	2057571	47963	7893	16.4564
astatham-gatk	SNP	ti	func_cds	homalt	99.9526	99.9052	100.0000	19.7136	5270	5	5270	0	0
ltrigg-rtg1	SNP	*	HG002complexvar	homalt	99.9052	99.8382	99.9722	19.7176	288107	467	288052	80	73	91.2500
ckim-vqsr	SNP	*	HG002complexvar	*	98.7826	97.6098	99.9840	19.7255	736350	18031	736201	118	58	49.1525
jpowers-varprowl	SNP	ti	HG002complexvar	homalt	99.7216	99.9488	99.4954	19.7390	193364	99	193412	981	709	72.2732
jlack-gatk	SNP	*	HG002complexvar	homalt	99.9456	99.9096	99.9816	19.7398	288313	261	288284	53	46	86.7925
jli-custom	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
dgrover-gatk	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
qzeng-custom	SNP	*	HG002complexvar	het	99.0563	98.3261	99.7975	19.7489	457708	7792	449025	911	250	27.4424
ghariani-varprowl	SNP	ti	HG002complexvar	*	99.5322	99.7412	99.3241	19.7678	507113	1316	507283	3452	789	22.8563
raldana-dualsentieon	SNP	tv	*	homalt	99.9865	99.9801	99.9928	19.7814	377048	75	377042	27	21	77.7778
ghariani-varprowl	SNP	*	*	homalt	99.7891	99.9588	99.6200	19.7823	1179670	486	1179792	4500	2208	49.0667
gduggal-snapvard	SNP	ti	HG002complexvar	*	97.8937	96.7473	99.0676	19.7850	491898	16538	483039	4546	1783	39.2213
ltrigg-rtg1	SNP	tv	*	homalt	99.9663	99.9491	99.9836	19.8090	376929	192	376963	62	42	67.7419
anovak-vg	SNP	ti	*	*	98.4812	98.2960	98.6672	19.8346	2049980	35538	2043729	27607	12786	46.3143
eyeh-varpipe	INDEL	D16_PLUS	HG002compoundhet	homalt	0.4762	12.5000	0.2427	19.8444	1	7	2	822	821	99.8783
bgallagher-sentieon	SNP	*	HG002complexvar	homalt	99.9685	99.9494	99.9875	19.8511	288428	146	288403	36	34	94.4444
astatham-gatk	SNP	*	HG002complexvar	homalt	99.9516	99.9158	99.9875	19.8527	288331	243	288306	36	34	94.4444
dgrover-gatk	SNP	*	HG002complexvar	homalt	99.9653	99.9435	99.9872	19.8551	288411	163	288386	37	35	94.5946
raldana-dualsentieon	SNP	*	HG002complexvar	homalt	99.9794	99.9695	99.9893	19.8637	288486	88	288471	31	29	93.5484
ghariani-varprowl	SNP	ti	HG002complexvar	het	99.4535	99.6801	99.2280	19.8744	313754	1007	313878	2442	84	3.4398
gduggal-bwafb	SNP	*	HG002complexvar	homalt	99.8832	99.8222	99.9441	19.8833	288062	513	288090	161	137	85.0932
egarrison-hhga	SNP	*	HG002complexvar	homalt	99.8875	99.8351	99.9400	19.8887	288098	476	288126	173	140	80.9249
gduggal-snapfb	SNP	ti	HG002complexvar	*	99.2700	99.6259	98.9167	19.8956	506535	1902	507043	5553	819	14.7488
ckim-dragen	SNP	*	HG002complexvar	homalt	99.9551	99.9245	99.9858	19.8995	288356	218	288565	41	41	100.0000
jlack-gatk	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.9058	5271	4	5271	0	0
astatham-gatk	SNP	tv	*	homalt	99.9694	99.9475	99.9912	19.9071	376925	198	376910	33	26	78.7879
bgallagher-sentieon	SNP	tv	*	homalt	99.9838	99.9759	99.9918	19.9074	377032	91	377017	31	25	80.6452
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
jli-custom	SNP	*	HG002complexvar	homalt	99.9614	99.9404	99.9823	19.9145	288402	172	288385	51	37	72.5490
rpoplin-dv42	SNP	*	HG002complexvar	homalt	99.9511	99.9421	99.9601	19.9304	288407	167	288378	115	109	94.7826
qzeng-custom	SNP	*	HG002complexvar	*	99.1204	98.4430	99.8072	19.9398	742639	11746	723843	1398	631	45.1359
eyeh-varpipe	SNP	tv	*	homalt	99.9630	99.9676	99.9583	19.9401	377001	122	371165	155	57	36.7742
ndellapenna-hhga	SNP	*	HG002complexvar	homalt	99.8626	99.8292	99.8960	19.9404	288081	493	288110	300	268	89.3333
bgallagher-sentieon	SNP	*	*	het	99.8943	99.9607	99.8280	19.9469	1872851	736	1872726	3227	129	3.9975
jli-custom	SNP	tv	*	homalt	99.9816	99.9716	99.9915	19.9541	377016	107	377005	32	24	75.0000
hfeng-pmm3	SNP	*	HG002complexvar	homalt	99.9822	99.9730	99.9913	19.9554	288496	78	288478	25	24	96.0000
ltrigg-rtg1	SNP	tv	*	*	99.8285	99.8863	99.7709	19.9654	968593	1103	968859	2225	103	4.6292
dgrover-gatk	SNP	tv	*	homalt	99.9813	99.9706	99.9920	19.9848	377012	111	376997	30	24	80.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	87.3563	77.5510	100.0000	20.0000	38	11	40	0	0
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	96.0000	92.3077	100.0000	20.0000	12	1	12	0	0
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	75.6757	60.8696	100.0000	20.0000	14	9	16	0	0
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	93.0233	86.9565	100.0000	20.0000	20	3	20	0	0
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	82.0513	69.5652	100.0000	20.0000	16	7	16	0	0

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