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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 401 402 403 404 405 406 407 408 409 ... 1720 1721 » 20201-20250 / 86044 show all
astatham-gatk	SNP	*	*	*	99.5934	99.2091	99.9807	19.0428	3030461	24158	3030315	584	162	27.7397
dgrover-gatk	SNP	*	HG002complexvar	*	99.9517	99.9260	99.9773	19.0606	753823	558	753668	171	88	51.4620
asubramanian-gatk	SNP	*	HG002complexvar	het	98.3318	96.7914	99.9221	19.0611	450561	14936	450442	351	31	8.8319
rpoplin-dv42	SNP	*	*	*	99.9587	99.9447	99.9728	19.0681	3052930	1689	3052766	832	433	52.0433
eyeh-varpipe	SNP	ti	*	*	99.7598	99.9651	99.5553	19.0734	2084791	727	2061083	9206	307	3.3348
mlin-fermikit	SNP	*	func_cds	*	99.4453	99.2617	99.6295	19.0809	18016	134	18016	67	48	71.6418
gduggal-snapfb	INDEL	I6_15	HG002compoundhet	het	56.6000	41.8269	87.5070	19.0965	87	121	4686	669	652	97.4589
ckim-gatk	SNP	*	HG002complexvar	het	99.7401	99.5255	99.9558	19.1024	463288	2209	463160	205	69	33.6585
gduggal-snapfb	SNP	ti	*	homalt	99.7832	99.8062	99.7602	19.1162	801483	1556	801532	1927	269	13.9595
gduggal-snapplat	SNP	*	*	homalt	99.3703	98.8374	99.9089	19.1469	1166442	13720	1166214	1063	359	33.7723
gduggal-snapvard	INDEL	I1_5	func_cds	homalt	96.1113	93.2773	99.1228	19.1489	111	8	113	1	1	100.0000
ciseli-custom	INDEL	I1_5	func_cds	homalt	91.8455	89.9160	93.8596	19.1489	107	12	107	7	6	85.7143
gduggal-bwaplat	SNP	ti	HG002complexvar	homalt	98.4485	97.0077	99.9328	19.1570	187674	5789	187425	126	109	86.5079
ckim-dragen	SNP	*	HG002complexvar	het	99.9146	99.9212	99.9081	19.1598	465130	367	465401	428	195	45.5607
jlack-gatk	SNP	*	HG002complexvar	het	99.8914	99.8855	99.8973	19.1615	464964	533	464834	478	152	31.7992
jmaeng-gatk	SNP	*	HG002complexvar	het	99.7155	99.4778	99.9544	19.1665	463066	2431	462938	211	65	30.8057
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2235	98.4589	100.0000	19.2146	575	9	576	0	0
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
gduggal-snapfb	INDEL	D6_15	HG002compoundhet	het	60.7617	44.3925	96.2540	19.2156	380	476	5730	223	211	94.6188
raldana-dualsentieon	SNP	*	*	het	99.8865	99.8694	99.9036	19.2179	1871141	2446	1871016	1806	43	2.3810
asubramanian-gatk	SNP	ti	*	*	99.0306	98.1234	99.9548	19.2315	2046375	39136	2046316	926	90	9.7192
gduggal-snapvard	SNP	tv	*	homalt	99.4119	98.9054	99.9237	19.2463	372995	4128	370593	283	154	54.4170
dgrover-gatk	SNP	*	*	*	99.9456	99.9631	99.9282	19.2565	3053492	1127	3053343	2195	207	9.4305
astatham-gatk	SNP	*	HG002complexvar	*	99.1835	98.3938	99.9860	19.2643	742264	12117	742112	104	62	59.6154
ckim-isaac	SNP	tv	*	het	98.4858	97.0571	99.9572	19.2906	574291	17413	574576	246	32	13.0081
ckim-vqsr	SNP	*	HG002complexvar	het	99.0965	98.2281	99.9803	19.3098	457249	8248	457124	90	32	35.5556
ckim-isaac	SNP	tv	HG002complexvar	*	95.4727	91.5159	99.7871	19.3101	225271	20884	225437	481	401	83.3680
mlin-fermikit	SNP	tv	*	*	98.7665	98.1308	99.4104	19.3147	951572	18126	951506	5643	4116	72.9399
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	47.3186	31.7661	92.7083	19.3277	277	595	89	7	6	85.7143
cchapple-custom	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.3326	5271	4	5270	0	0
cchapple-custom	SNP	ti	*	*	99.8773	99.8866	99.8679	19.3368	2083147	2364	2081936	2754	477	17.3203
anovak-vg	SNP	*	HG002complexvar	het	97.3572	96.6062	98.1199	19.3647	449702	15798	439022	8412	6308	74.9881
ltrigg-rtg2	SNP	tv	*	homalt	99.9678	99.9486	99.9870	19.3650	376927	194	376951	49	41	83.6735
gduggal-snapfb	SNP	ti	HG002complexvar	homalt	99.6542	99.7054	99.6030	19.3776	192894	570	192940	769	240	31.2094
raldana-dualsentieon	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	19.3825	5274	1	5274	0	0
jlack-gatk	SNP	*	HG002complexvar	*	99.9118	99.8944	99.9292	19.3948	753584	797	753425	534	201	37.6404
ciseli-custom	SNP	ti	HG002complexvar	homalt	96.5088	99.0536	94.0915	19.4065	191633	1831	189105	11875	5178	43.6042
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	87.7870	78.7671	99.1398	19.4107	460	124	461	4	4	100.0000
gduggal-snapplat	SNP	ti	HG002complexvar	homalt	99.0919	98.3790	99.8152	19.4474	190328	3136	190130	352	203	57.6705
anovak-vg	SNP	*	HG002complexvar	*	97.6964	96.9184	98.4870	19.4533	731138	23247	712315	10943	8438	77.1087
ckim-dragen	SNP	*	HG002complexvar	*	99.9301	99.9223	99.9379	19.4552	753795	586	754278	469	236	50.3198
anovak-vg	SNP	tv	*	homalt	99.0679	98.8237	99.3132	19.4559	372687	4436	371341	2568	1960	76.3240
ltrigg-rtg2	SNP	tv	*	*	99.8284	99.8825	99.7743	19.4672	968557	1139	968810	2192	110	5.0183
ckim-gatk	SNP	*	HG002complexvar	*	99.5695	99.1746	99.9675	19.4723	748154	6227	748002	243	101	41.5638
ltrigg-rtg2	SNP	tv	*	het	99.7405	99.8410	99.6402	19.4900	590763	941	590991	2134	60	2.8116
gduggal-bwaplat	SNP	ti	HG002complexvar	*	97.9838	97.0464	98.9394	19.5056	493419	15017	493754	5293	700	13.2250
jmaeng-gatk	SNP	*	HG002complexvar	*	99.5566	99.1508	99.9656	19.5091	747975	6406	747823	257	106	41.2451
asubramanian-gatk	SNP	*	HG002complexvar	*	98.2310	96.5837	99.9354	19.5730	728609	25772	728466	471	54	11.4650
rpoplin-dv42	SNP	*	*	het	99.9475	99.9278	99.9673	19.5765	1872234	1353	1872094	613	268	43.7194
ckim-isaac	SNP	tv	HG002complexvar	homalt	95.1060	90.6877	99.9768	19.5838	86254	8857	86277	20	16	80.0000

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