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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
20151-20200 / 86044 show all
hfeng-pmm3SNP**het
99.9317
99.8994
99.9639
18.5779
18717021885187157867530
4.4444
astatham-gatkSNPti*het
99.3889
98.8086
99.9762
18.5890
126661815273126656330260
19.8675
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
86.1876
77.6398
96.8504
18.5897
1253612344
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800
eyeh-varpipeSNPtiHG002compoundhethetalt
99.8980
99.8273
99.9687
18.5958
5781639821
50.0000
qzeng-customSNPtiHG002complexvarhomalt
99.2303
98.6432
99.8245
18.6252
1908392625186005327247
75.5352
gduggal-bwavardSNP*HG002complexvarhomalt
98.4291
96.9651
99.9379
18.6318
2798178758270523168110
65.4762
ckim-isaacSNPtiHG002compoundhethetalt
96.2366
92.7461
100.0000
18.6364
5374253700
asubramanian-gatkSNPtiHG002complexvarhomalt
98.1740
96.4210
99.9920
18.6413
18653969241865291515
100.0000
cchapple-customSNP*HG002complexvar*
99.8003
99.6796
99.9214
18.6735
7519642417749599590426
72.2034
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.4836
98.9726
100.0000
18.6798
578657900
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.4836
98.9726
100.0000
18.6798
578657900
mlin-fermikitSNP*HG002complexvar*
98.2239
97.1863
99.2840
18.6883
7331592122673307452875014
94.8364
mlin-fermikitSNPtv*het
98.7020
97.6537
99.7731
18.7114
57782113883577760131414
1.0655
gduggal-bwavardSNPtiHG002complexvarhet
98.2415
97.2329
99.2714
18.7202
306056871030205022171521
68.6062
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
cchapple-customSNP*HG002complexvarhet
99.7839
99.6872
99.8808
18.7433
4640411456463256553394
71.2477
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
25.0000
14.4578
92.3077
18.7500
12711211
100.0000
ckim-vqsrSNPtiHG002complexvarhomalt
98.3712
96.8046
99.9893
18.7775
18728161821872712020
100.0000
gduggal-snapvardSNP*HG002complexvarhomalt
98.1658
96.5628
99.8230
18.7873
2786569919269038477269
56.3941
ciseli-customSNPtiHG002complexvar*
96.3915
97.0905
95.7026
18.7897
49364414793488642219425540
25.2484
jpowers-varprowlSNPtiHG002complexvar*
99.5182
99.3169
99.7203
18.7923
50496134735051191417799
56.3867
hfeng-pmm1SNP*HG002complexvar*
99.8780
99.7704
99.9859
18.8078
752649173275250410651
48.1132
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
mlin-fermikitSNPtifunc_cdshomalt
99.5745
99.8294
99.3210
18.8179
5266952663634
94.4444
mlin-fermikitSNPtiHG002complexvarhomalt
98.3813
98.4958
98.2669
18.8239
190554291019057233613261
97.0247
raldana-dualsentieonSNP*HG002complexvar*
99.8769
99.7713
99.9826
18.8281
752656172575251113147
35.8779
hfeng-pmm2SNP*HG002complexvar*
99.8743
99.7689
99.9799
18.8346
752638174375249515159
39.0728
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087
ltrigg-rtg2SNP*HG002complexvar*
99.8684
99.7896
99.9473
18.8678
7527971587752943397167
42.0655
astatham-gatkSNP*HG002complexvarhet
98.7010
97.4496
99.9850
18.8713
453625118724534986828
41.1765
hfeng-pmm3SNP*HG002complexvar*
99.8875
99.7894
99.9859
18.8968
752792158975264510640
37.7358
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
ckim-isaacSNPtvHG002complexvarhet
95.8287
92.0463
99.9352
18.9218
138745119891388879017
18.8889
jli-customSNP**het
99.9088
99.9498
99.8677
18.9256
187264794018725582480145
5.8468
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
ckim-isaacSNPtvHG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNP*HG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
anovak-vgSNPtifunc_cdshomalt
99.1630
98.9384
99.3887
18.9378
52195652033230
93.7500
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7425
99.4863
100.0000
18.9415
581358200
rpoplin-dv42SNP*HG002complexvar*
99.9179
99.8694
99.9664
18.9545
753396985753221253214
84.5850
ndellapenna-hhgaSNP*HG002complexvar*
99.7910
99.6474
99.9350
18.9550
7517212660751769489351
71.7791
egarrison-hhgaSNP*HG002complexvar*
99.8252
99.7002
99.9506
18.9844
7521192262752170372223
59.9462
qzeng-customSNPtifunc_cdshomalt
99.8860
99.8673
99.9047
18.9998
52687524353
60.0000
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
ciseli-customSNP**homalt
98.7740
99.5427
98.0170
19.0299
1174765539711681212363210880
46.0393
gduggal-bwavardSNPtv*homalt
99.4965
99.0327
99.9647
19.0358
373475364837122013186
65.6489