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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
20051-20100 / 86044 show all
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5710
99.3151
99.8282
17.5637
580458111
100.0000
jlack-gatkSNPtiHG002complexvarhet
99.8980
99.8818
99.9142
17.5660
31439437231434027088
32.5926
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
jmaeng-gatkSNPtiHG002complexvarhet
99.7293
99.5044
99.9553
17.6005
313206156031315614049
35.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5701
99.1438
100.0000
17.6136
579558000
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
astatham-gatkSNPtiHG002complexvar*
99.2181
98.4614
99.9866
17.7102
50061378235005486741
61.1940
ckim-isaacINDELD6_15HG002compoundhethetalt
90.9387
83.9774
99.1585
17.7185
6845130671886150
81.9672
ckim-vqsrSNP**homalt
98.9894
98.0027
99.9961
17.7187
11565902357111565674541
91.1111
ckim-vqsrSNPtiHG002complexvarhet
99.1493
98.3302
99.9822
17.7224
30951052563094625518
32.7273
anovak-vgSNPtiHG002complexvarhet
97.2372
96.4650
98.0220
17.7484
3036391112729961060464694
77.6381
dgrover-gatkSNPti**
99.9570
99.9639
99.9500
17.7617
208475975220846961042126
12.0921
raldana-dualsentieonSNPti*het
99.9019
99.8809
99.9229
17.7757
12803641527128031398821
2.1255
gduggal-snapvardSNPtiHG002complexvarhomalt
98.1979
96.6107
99.8382
17.7966
1869076557182591296181
61.1486
anovak-vgSNPtiHG002complexvar*
97.6154
96.7854
98.4597
17.8294
4920931634448465575826075
80.1240
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566
asubramanian-gatkSNPtiHG002complexvar*
98.3380
96.7457
99.9835
17.8536
491890165464918308136
44.4444
mlin-fermikitSNPtifunc_cds*
99.5022
99.3109
99.6942
17.8687
1369295136924234
80.9524
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
ckim-gatkSNPtiHG002complexvar*
99.5943
99.2243
99.9671
17.9110
504492394450443216674
44.5783
ghariani-varprowlSNPti*homalt
99.8530
99.9608
99.7455
17.9110
80272031580276920481014
49.5117
jmaeng-gatkSNPtiHG002complexvar*
99.5813
99.1995
99.9661
17.9457
504366407050430617177
45.0292
hfeng-pmm3SNP**homalt
99.9916
99.9889
99.9942
17.9575
118003013111800136845
66.1765
anovak-vgSNPtiHG002complexvarhomalt
98.2762
97.3918
99.1768
17.9619
188418504618504515361381
89.9089
ciseli-customSNPtiHG002compoundhethetalt
89.3738
81.3472
99.1579
17.9620
47110847142
50.0000
ciseli-customSNP*HG002compoundhethetalt
90.1141
82.4826
99.3017
17.9840
71115171152
40.0000
ciseli-customSNPtvHG002compoundhethetalt
90.1141
82.4826
99.3017
17.9840
71115171152
40.0000
hfeng-pmm1SNP*HG002complexvarhet
99.8138
99.6436
99.9845
18.0286
46383816594637087219
26.3889
hfeng-pmm2SNP*HG002complexvarhet
99.8103
99.6430
99.9782
18.0375
463835166246370610115
14.8515
hfeng-pmm1SNP**homalt
99.9908
99.9886
99.9929
18.0449
118002713411800138456
66.6667
qzeng-customSNPtiHG002complexvarhet
99.0720
98.3388
99.8162
18.0479
3095375229307433566153
27.0318
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
hfeng-pmm1SNP**het
99.9238
99.8812
99.9665
18.1036
18713612226187123662848
7.6433
ndellapenna-hhgaSNP**homalt
99.9243
99.8838
99.9648
18.1151
117879013711178818415332
80.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8285
99.6575
100.0000
18.1180
582258300
ckim-isaacSNP*func_cdshomalt
99.3365
98.6818
100.0000
18.1191
688792688700
ltrigg-rtg2SNPtiHG002complexvarhomalt
99.9240
99.8739
99.9741
18.1301
1932192441931175049
98.0000
ckim-vqsrSNPtiHG002complexvar*
98.8535
97.7474
99.9849
18.1351
496983114534969257538
50.6667
hfeng-pmm2SNP**homalt
99.9900
99.9890
99.9910
18.1427
1180031130118001810672
67.9245
raldana-dualsentieonSNP*HG002complexvarhet
99.8134
99.6490
99.9784
18.1564
463863163446373310018
18.0000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
11.1111
18.1818
00187
87.5000
ndellapenna-hhgaSNP***
99.8818
99.8118
99.9519
18.1821
3048871574830489191468467
31.8120
jpowers-varprowlSNPtiHG002complexvarhet
99.4252
98.9938
99.8603
18.1914
311597316731170743690
20.6422
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5701
99.1438
100.0000
18.1946
579558000
egarrison-hhgaSNP**homalt
99.9329
99.8872
99.9785
18.1960
117883013311178859253173
68.3794
ndellapenna-hhgaSNP**het
99.8554
99.7670
99.9441
18.2036
1869221436618692411046128
12.2371
hfeng-pmm3SNP*HG002complexvarhet
99.8290
99.6758
99.9825
18.2080
46398815094638598116
19.7531