PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19901-19950 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.9474 | 65.2174 | 100.0000 | 7.6923 | 15 | 8 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 8.6957 | 21 | 2 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 11.7647 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 12.5000 | 6 | 6 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 13.0435 | 20 | 3 | 20 | 0 | 0 | ||
| ckim-isaac | SNP | ti | * | homalt | 98.4855 | 97.0214 | 99.9944 | 13.4256 | 779120 | 23919 | 779153 | 44 | 32 | 72.7273 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 13.6364 | 19 | 4 | 19 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | tech_badpromoters | het | 62.5000 | 50.0000 | 83.3333 | 14.2857 | 5 | 5 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 14.2857 | 6 | 6 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | * | * | homalt | 98.3805 | 96.8182 | 99.9940 | 14.4545 | 1142612 | 37550 | 1142668 | 69 | 50 | 72.4638 | |
| mlin-fermikit | SNP | ti | * | het | 98.8419 | 97.7886 | 99.9182 | 14.5462 | 1253549 | 28348 | 1253519 | 1026 | 32 | 3.1189 | |
| ckim-isaac | SNP | ti | * | * | 98.6272 | 97.3318 | 99.9576 | 14.8667 | 2029873 | 55645 | 2030218 | 862 | 462 | 53.5963 | |
| mlin-fermikit | SNP | ti | * | * | 98.9073 | 98.2768 | 99.5460 | 14.9446 | 2049581 | 35937 | 2049572 | 9348 | 8085 | 86.4891 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.2318 | 34.6784 | 91.0828 | 15.1351 | 275 | 518 | 143 | 14 | 14 | 100.0000 | |
| cchapple-custom | SNP | ti | * | homalt | 99.9468 | 99.8984 | 99.9953 | 15.1867 | 802222 | 816 | 801552 | 38 | 34 | 89.4737 | |
| ckim-isaac | SNP | ti | HG002complexvar | het | 96.4266 | 93.1447 | 99.9482 | 15.3403 | 293188 | 21578 | 293343 | 152 | 18 | 11.8421 | |
| anovak-vg | SNP | ti | * | homalt | 99.1281 | 98.7623 | 99.4967 | 15.3503 | 793100 | 9939 | 790097 | 3997 | 3582 | 89.6172 | |
| mlin-fermikit | SNP | ti | * | homalt | 99.0118 | 99.0588 | 98.9648 | 15.5441 | 795481 | 7558 | 795502 | 8321 | 8052 | 96.7672 | |
| ckim-isaac | SNP | ti | * | het | 98.7325 | 97.5284 | 99.9667 | 15.6908 | 1250214 | 31683 | 1250525 | 417 | 31 | 7.4341 | |
| ckim-isaac | SNP | ti | HG002complexvar | * | 96.1858 | 92.7592 | 99.8753 | 15.7158 | 471622 | 36815 | 471809 | 589 | 446 | 75.7216 | |
| ckim-dragen | SNP | ti | * | homalt | 99.9710 | 99.9493 | 99.9928 | 15.7227 | 802631 | 407 | 802738 | 58 | 51 | 87.9310 | |
| mlin-fermikit | SNP | ti | HG002complexvar | het | 98.1941 | 96.4761 | 99.9743 | 15.7268 | 303674 | 11092 | 303641 | 78 | 14 | 17.9487 | |
| gduggal-bwavard | SNP | ti | * | homalt | 99.5201 | 99.0724 | 99.9718 | 15.7269 | 795590 | 7449 | 791466 | 223 | 186 | 83.4081 | |
| raldana-dualsentieon | SNP | ti | * | homalt | 99.9899 | 99.9839 | 99.9959 | 15.7711 | 802909 | 129 | 802901 | 33 | 32 | 96.9697 | |
| ltrigg-rtg2 | SNP | ti | * | het | 99.8504 | 99.8647 | 99.8361 | 15.7716 | 1280159 | 1735 | 1280167 | 2101 | 75 | 3.5697 | |
| ltrigg-rtg2 | SNP | ti | * | * | 99.8963 | 99.8985 | 99.8940 | 15.8136 | 2083396 | 2116 | 2083301 | 2210 | 180 | 8.1448 | |
| ltrigg-rtg2 | SNP | ti | * | homalt | 99.9701 | 99.9529 | 99.9873 | 15.8538 | 802658 | 378 | 802554 | 102 | 98 | 96.0784 | |
| bgallagher-sentieon | SNP | ti | * | homalt | 99.9867 | 99.9791 | 99.9944 | 15.8584 | 802870 | 168 | 802861 | 45 | 41 | 91.1111 | |
| astatham-gatk | SNP | ti | * | homalt | 99.9764 | 99.9582 | 99.9946 | 15.8604 | 802702 | 336 | 802693 | 43 | 41 | 95.3488 | |
| mlin-fermikit | SNP | * | * | het | 98.7978 | 97.7460 | 99.8724 | 15.9070 | 1831370 | 42231 | 1831279 | 2340 | 46 | 1.9658 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | * | homalt | 99.9851 | 99.9756 | 99.9946 | 15.9219 | 802842 | 196 | 802833 | 43 | 39 | 90.6977 | |
| jli-custom | SNP | ti | * | homalt | 99.9866 | 99.9797 | 99.9934 | 15.9268 | 802875 | 163 | 802870 | 53 | 42 | 79.2453 | |
| jlack-gatk | SNP | ti | * | homalt | 99.9698 | 99.9522 | 99.9874 | 15.9699 | 802654 | 384 | 802644 | 101 | 66 | 65.3465 | |
| qzeng-custom | SNP | ti | * | homalt | 99.6207 | 99.3383 | 99.9047 | 15.9860 | 797725 | 5314 | 792891 | 756 | 473 | 62.5661 | |
| ckim-isaac | SNP | * | * | * | 98.5357 | 97.1616 | 99.9494 | 15.9907 | 2967930 | 86704 | 2968584 | 1504 | 880 | 58.5106 | |
| asubramanian-gatk | SNP | ti | * | homalt | 98.9721 | 97.9680 | 99.9969 | 16.0441 | 786720 | 16318 | 786711 | 24 | 22 | 91.6667 | |
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| jmaeng-gatk | SNP | ti | * | homalt | 99.6264 | 99.2642 | 99.9912 | 16.0789 | 797129 | 5909 | 797120 | 70 | 46 | 65.7143 | |