PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
15751-15800 / 86044 show all
ckim-gatkINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
cchapple-customINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
75.9036
0.0000
0.0000
6320000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
95.4545
0.0000
0.0000
422000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
95.7878
0.0000
0.0000
61427000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
93.3775
0.0000
0.0000
14110000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
99.5781
0.0000
0.0000
2361000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
91.6667
0.0000
0.0000
111000
cchapple-customINDELI6_15map_l100_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
40000
cchapple-customINDELI6_15map_l100_m1_e0hetalt
0.0000
90.9091
0.0000
0.0000
202000
cchapple-customINDELI6_15map_l100_m2_e0hetalt
0.0000
90.9091
0.0000
0.0000
202000
cchapple-customINDELI6_15map_l100_m2_e1hetalt
0.0000
90.9091
0.0000
0.0000
202000
cchapple-customINDELI6_15map_l125_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l125_m1_e0hetalt
0.0000
87.5000
0.0000
0.0000
71000
cchapple-customINDELI6_15map_l125_m2_e0hetalt
0.0000
87.5000
0.0000
0.0000
71000
cchapple-customINDELI6_15map_l125_m2_e1hetalt
0.0000
87.5000
0.0000
0.0000
71000
cchapple-customINDELI6_15map_l150_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l150_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m2_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m2_e1hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_sirenhetalt
0.0000
91.6667
0.0000
0.0000
666000
cchapple-customINDELI6_15segduphetalt
0.0000
97.7778
0.0000
0.0000
441000
cchapple-customINDELI6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNP**hetalt
0.0000
99.6556
0.0000
0.0000
8683000
cchapple-customSNP*HG002complexvarhetalt
0.0000
99.0323
0.0000
0.0000
3073000
cchapple-customSNP*HG002compoundhethetalt
0.0000
99.6520
0.0000
0.0000
8593000
cchapple-customSNP*decoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*func_cdshetalt
0.0000
100.0000
0.0000
0.0000
100000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000