PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
9451-9500 / 86044 show all
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUS**
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUS*het
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUS*hetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUS*homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002complexvar*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002compoundhet*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002compoundhethet
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSHG002compoundhethomalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSdecoy*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSdecoyhet
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSdecoyhomalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000