PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
gduggal-snapvardINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
100.0000
00000
gduggal-snapvardINDELD16_PLUSdecoyhet
0.0000
100.0000
04000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
01000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
hfeng-pmm3INDELI16_PLUSsegdupwithalthet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSsegdupwithalthet
0.0000
100.0000
00000
jli-customSNPtidecoyhet
0.0000
100.0000
00000
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ltrigg-rtg1INDELC6_15map_l100_m1_e0hetalt
0.0000
100.0000
00000
ltrigg-rtg1INDELD16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
ltrigg-rtg1INDELI16_PLUSmap_l125_m1_e0hetalt
33.3333
100.0000
12000
ltrigg-rtg2INDELC1_5map_l250_m1_e0hetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELI6_15map_l125_m0_e0hetalt
0.0000
100.0000
00000
mlin-fermikitSNP*decoyhetalt
0.0000
100.0000
00000
qzeng-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-dragenINDELC1_5map_l250_m1_e0hetalt
0.0000
100.0000
00000
raldana-dualsentieonINDEL*segdupwithalthetalt
0.0000
100.0000
00000
raldana-dualsentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42INDELC6_15map_l125_m1_e0hetalt
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
rpoplin-dv42SNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
dgrover-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_sirenhetalt
0.0000
100.0000
00000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
01000
eyeh-varpipeINDELD16_PLUSdecoyhetalt
0.0000
100.0000
00000
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5map_l125_m1_e0hetalt
0.0000
100.0000
00000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-snapfbINDELD6_15map_l125_m0_e0hetalt
66.6667
100.0000
42000
gduggal-snapplatINDELD6_15map_l125_m0_e0hetalt
0.0000
100.0000
06000
hfeng-pmm1INDELI16_PLUSmap_l250_m0_e0hetalt
0.0000
100.0000
00000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e1hetalt
0.0000
100.0000
00000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
hfeng-pmm3INDELI16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
hfeng-pmm3SNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
jli-customSNPtidecoyhetalt
0.0000
100.0000
00000
jmaeng-gatkINDELI6_15map_l250_m1_e0hetalt
0.0000
100.0000
00000