PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74501-74550 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.8797 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8797 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8797 | 16 | 0 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 75.0000 | 85.7143 | 99.8799 | 12 | 4 | 12 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8803 | 6 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8805 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.0875 | 71.7742 | 80.9524 | 99.8808 | 89 | 35 | 119 | 28 | 20 | 71.4286 | |
| raldana-dualsentieon | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8811 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0136 | 77.0115 | 85.4545 | 99.8819 | 67 | 20 | 94 | 16 | 4 | 25.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.8828 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8842 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8857 | 16 | 0 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8862 | 1 | 3 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8863 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8870 | 16 | 0 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.8880 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8880 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8885 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8893 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 93.3333 | 87.5000 | 100.0000 | 99.8894 | 14 | 2 | 14 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8894 | 1 | 4 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 89.6552 | 81.2500 | 100.0000 | 99.8895 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.8896 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8898 | 10 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.7161 | 93.1034 | 96.3855 | 99.8898 | 81 | 6 | 80 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8900 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8900 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5252 | 93.1034 | 91.9540 | 99.8905 | 81 | 6 | 80 | 7 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8907 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.8908 | 5 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.7419 | 78.1609 | 100.0000 | 99.8911 | 68 | 19 | 68 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 71.4286 | 100.0000 | 99.8911 | 15 | 6 | 19 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.8913 | 0 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8917 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 68.5714 | 60.0000 | 80.0000 | 99.8924 | 6 | 4 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.2194 | 94.2529 | 94.1860 | 99.8927 | 82 | 5 | 81 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 99.8930 | 0 | 1 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8936 | 1 | 4 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.8734 | 81.6092 | 100.0000 | 99.8937 | 71 | 16 | 73 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8942 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.7070 | 70.1149 | 87.1429 | 99.8944 | 61 | 26 | 61 | 9 | 5 | 55.5556 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8945 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.8948 | 0 | 0 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.8955 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8958 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8962 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8965 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |