PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
74101-74150 / 86044 show all
gduggal-bwavardINDELD16_PLUSdecoyhet
85.7143
75.0000
100.0000
99.5580
31400
asubramanian-gatkINDELI16_PLUSmap_l250_m1_e0*
0.0000
0.0000
99.5595
01010
0.0000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
88.8889
80.0000
100.0000
99.5595
82800
qzeng-customINDELI6_15decoyhomalt
0.0000
0.0000
99.5595
00010
0.0000
gduggal-bwaplatINDELD16_PLUSdecoy*
80.0000
66.6667
100.0000
99.5614
42400
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
20.0000
11.1111
100.0000
99.5614
18100
jlack-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.5617
60600
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
76.1905
80.0000
72.7273
99.5621
82833
100.0000
jmaeng-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.5633
60600
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5633
20200
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
85.7143
81.8182
90.0000
99.5646
92911
100.0000
ndellapenna-hhgaINDEL*map_l250_m2_e1*
96.3855
96.0961
96.6767
99.5648
32013320113
27.2727
ltrigg-rtg1INDELC1_5segduphet
0.0000
0.0000
100.0000
99.5658
00300
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
64.2857
90.0000
50.0000
99.5663
91770
0.0000
gduggal-bwaplatINDEL*map_l250_m0_e0*
47.0588
30.7692
100.0000
99.5667
24542400
gduggal-bwaplatINDEL*map_l250_m2_e0hetalt
50.0000
33.3333
100.0000
99.5680
24200
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.5680
10110
0.0000
qzeng-customINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
99.5690
00020
0.0000
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
88.8889
80.0000
100.0000
99.5708
41400
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.5726
11100
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
99.5739
21211
100.0000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
62.8571
55.0000
73.3333
99.5745
1191144
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
50.0000
33.3333
100.0000
99.5745
36200
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
44.4444
50.0000
40.0000
99.5759
22232
66.6667
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
80.0000
72.7273
88.8889
99.5759
83811
100.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
85.7143
85.7143
85.7143
99.5760
61611
100.0000
gduggal-bwaplatINDEL*map_l250_m2_e1hetalt
50.0000
33.3333
100.0000
99.5763
24200
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.5763
11100
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
67.9335
76.4706
61.1111
99.5774
1341170
0.0000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5781
20200
hfeng-pmm2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.5781
10110
0.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
99.5787
21211
100.0000
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
80.0000
80.0000
80.0000
99.5795
82821
50.0000
gduggal-bwafbINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
40.0000
40.0000
40.0000
99.5802
23232
66.6667
ckim-vqsrINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.5807
60600
ckim-gatkINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.5807
60600
gduggal-bwaplatINDELI6_15map_l250_m1_e0het
40.0000
25.0000
100.0000
99.5833
13100
ghariani-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5833
20200
qzeng-customINDELC1_5map_l150_m0_e0het
0.0000
0.0000
100.0000
99.5833
00100
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5842
20200
jpowers-varprowlINDELD16_PLUSmap_l250_m1_e0*
75.0000
75.0000
75.0000
99.5863
31311
100.0000
cchapple-customINDELI16_PLUSmap_l250_m2_e0*
100.0000
100.0000
100.0000
99.5868
10100
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.5874
70711
100.0000
raldana-dualsentieonINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.5885
10100
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
85.7143
75.0000
100.0000
99.5890
31300
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5893
20200
gduggal-snapplatINDELD6_15map_l250_m2_e0het
35.2941
21.4286
100.0000
99.5902
311100
gduggal-bwaplatINDEL*map_l250_m0_e0het
50.7042
33.9623
100.0000
99.5919
18351800
eyeh-varpipeINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
76.1488
75.0000
77.3333
99.5926
155581714
82.3529
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
84.2105
80.0000
88.8889
99.5929
82811
100.0000