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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
74051-74100 / 86044 show all
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
99.5208
21211
100.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
88.8889
88.8889
88.8889
99.5220
81811
100.0000
ckim-isaacINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
85.7143
75.0000
100.0000
99.5238
93900
asubramanian-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5238
50500
egarrison-hhgaINDEL*map_l250_m2_e0*
96.3636
96.0725
96.6565
99.5239
31813318113
27.2727
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
76.9231
71.4286
83.3333
99.5242
52510
0.0000
qzeng-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
69.7987
80.0000
61.9048
99.5263
1641380
0.0000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
93.7500
88.2353
100.0000
99.5292
1521500
astatham-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5305
50500
ltrigg-rtg2INDELC6_15map_siren*
0.0000
0.0000
100.0000
99.5305
00100
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
60.6061
58.8235
62.5000
99.5311
1071063
50.0000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
44.4444
50.0000
40.0000
99.5327
22232
66.6667
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
99.5327
11100
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
75.0000
70.5882
80.0000
99.5336
1251232
66.6667
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5338
40400
gduggal-snapplatINDEL*map_l150_m2_e0hetalt
30.3797
19.0476
75.0000
99.5338
417311
100.0000
gduggal-bwaplatINDELI6_15map_l150_m0_e0het
40.0000
25.0000
100.0000
99.5349
13100
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
75.0000
75.0000
75.0000
99.5354
31310
0.0000
ckim-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
80.0000
80.0000
99.5362
41410
0.0000
ckim-vqsrINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
80.0000
80.0000
99.5362
41410
0.0000
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
87.5000
87.5000
87.5000
99.5368
71711
100.0000
gduggal-bwaplatINDELI1_5map_l125_m0_e0hetalt
40.0000
25.0000
100.0000
99.5370
13100
ndellapenna-hhgaINDEL*map_l250_m1_e0*
96.0526
95.7377
96.3696
99.5373
29213292113
27.2727
egarrison-hhgaINDEL*map_l250_m2_e1*
96.3855
96.0961
96.6767
99.5385
32013320113
27.2727
gduggal-snapfbINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
85.7143
75.0000
100.0000
99.5387
931000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
96.3636
92.9825
100.0000
99.5388
5345300
cchapple-customINDELI16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
99.5413
10100
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
75.0000
75.0000
75.0000
99.5418
31310
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
75.0000
75.0000
75.0000
99.5418
31310
0.0000
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
40.0000
40.0000
40.0000
99.5421
23232
66.6667
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5444
40400
astatham-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5460
40400
gduggal-bwaplatINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.5475
11100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
70.5882
60.0000
85.7143
99.5484
64611
100.0000
gduggal-bwaplatINDELD16_PLUSmap_l250_m2_e0het
50.0000
33.3333
100.0000
99.5495
12100
gduggal-snapplatINDELD6_15map_l250_m1_e0het
16.6667
9.0909
100.0000
99.5495
110100
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
75.8621
91.6667
64.7059
99.5499
1111165
83.3333
ciseli-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
71.4286
62.5000
83.3333
99.5506
53510
0.0000
ltrigg-rtg1INDELC6_15map_siren*
0.0000
0.0000
100.0000
99.5516
00100
qzeng-customINDELC1_5map_l150_m2_e0*
0.0000
0.0000
100.0000
99.5516
00200
ndellapenna-hhgaINDEL*map_l250_m2_e0*
96.3636
96.0725
96.6565
99.5517
31813318113
27.2727
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
75.0000
75.0000
75.0000
99.5526
31310
0.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
75.0000
75.0000
75.0000
99.5526
31310
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5536
20200
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
94.1176
100.0000
88.8889
99.5536
80811
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.5547
60700
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
70.5882
100.0000
54.5455
99.5554
60653
60.0000
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.5560
40400
ghariani-varprowlINDELD16_PLUSmap_l250_m0_e0het
66.6667
100.0000
50.0000
99.5565
10110
0.0000
gduggal-bwaplatINDELD16_PLUSmap_l250_m2_e1het
50.0000
33.3333
100.0000
99.5575
12100