PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
73601-73650 / 86044 show all
raldana-dualsentieonINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
95.6522
91.6667
100.0000
99.2450
1111100
ckim-vqsrSNPtisegduphetalt
100.0000
100.0000
100.0000
99.2453
20200
jlack-gatkINDELI6_15map_l250_m1_e0het
66.6667
50.0000
100.0000
99.2453
22200
ckim-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
99.2453
20200
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
99.2467
71800
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.2467
70800
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
55.3846
42.8571
78.2609
99.2474
18241855
100.0000
asubramanian-gatkINDELI16_PLUSmap_l250_m1_e0het
0.0000
0.0000
99.2481
01010
0.0000
ciseli-customINDELC1_5map_l125_m2_e0het
0.0000
0.0000
99.2481
00020
0.0000
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2481
20200
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2481
20200
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2481
20200
dgrover-gatkINDELI16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
99.2481
00010
0.0000
jmaeng-gatkINDELI1_5map_l250_m0_e0het
85.7143
80.0000
92.3077
99.2499
1231210
0.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
94.5924
91.2281
98.2143
99.2499
5255511
100.0000
ghariani-varprowlINDELD16_PLUSmap_l250_m2_e0het
75.0000
100.0000
60.0000
99.2504
30321
50.0000
qzeng-customINDELD6_15map_l250_m0_e0het
33.3333
25.0000
50.0000
99.2509
13221
50.0000
hfeng-pmm2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
92.6829
95.0000
90.4762
99.2519
1911920
0.0000
qzeng-customINDELC1_5map_l100_m2_e0het
0.0000
0.0000
100.0000
99.2523
00400
qzeng-customINDELC1_5map_sirenhomalt
0.0000
0.0000
100.0000
99.2537
00100
asubramanian-gatkINDELI16_PLUSmap_l250_m0_e0*
0.0000
0.0000
99.2537
00010
0.0000
bgallagher-sentieonINDELI16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
99.2537
00010
0.0000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2537
20200
ciseli-customINDELC1_5map_l125_m2_e1het
0.0000
0.0000
99.2537
00020
0.0000
ghariani-varprowlINDELD16_PLUSmap_l250_m2_e1het
75.0000
100.0000
60.0000
99.2548
30321
50.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
95.6522
100.0000
91.6667
99.2551
1001110
0.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
92.6411
87.7193
98.1481
99.2565
5075311
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
75.0000
75.0000
75.0000
99.2579
31310
0.0000
hfeng-pmm1INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
92.6829
95.0000
90.4762
99.2580
1911920
0.0000
cchapple-customINDELC6_15segduphet
0.0000
0.0000
100.0000
99.2593
00200
ciseli-customINDELC1_5map_sirenhet
0.0000
0.0000
33.3333
99.2629
00120
0.0000
qzeng-customINDELC1_5map_l125_m2_e0*
0.0000
0.0000
100.0000
99.2634
00400
asubramanian-gatkSNPtvmap_l250_m0_e0het
28.2282
16.4336
100.0000
99.2644
944789400
ckim-gatkINDELD1_5map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.2647
12100
ckim-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2647
10100
ckim-vqsrINDELD1_5map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.2647
12100
ckim-vqsrINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2647
10100
qzeng-customINDELC1_5map_l100_m2_e1het
0.0000
0.0000
100.0000
99.2647
00400
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.2647
70700
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.2652
1101100
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2674
20200
ckim-dragenINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.2674
20200
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
95.2381
90.9091
100.0000
99.2679
1011000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.1176
94.1176
94.1176
99.2682
1611610
0.0000
qzeng-customINDELC1_5map_l125_m1_e0het
0.0000
0.0000
100.0000
99.2683
00300
gduggal-bwaplatINDELD6_15map_l250_m1_e0het
62.5000
45.4545
100.0000
99.2690
56500
gduggal-bwaplatINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
99.2701
21200
gduggal-bwaplatINDELI6_15map_l250_m2_e0het
57.1429
40.0000
100.0000
99.2701
23200
ciseli-customINDELC1_5map_l150_m0_e0*
0.0000
0.0000
50.0000
99.2701
00110
0.0000
mlin-fermikitINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
80.0000
83.3333
76.9231
99.2709
1021032
66.6667