PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73351-73400 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0596 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0602 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0610 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 60.0000 | 99.0619 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0654 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0654 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-vqsr | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0654 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0654 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | het | 63.9175 | 46.9697 | 100.0000 | 99.0657 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | * | 38.0148 | 23.5294 | 98.9011 | 99.0675 | 180 | 585 | 180 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0698 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0698 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.0706 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.0706 | 0 | 0 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 74.0741 | 83.3333 | 66.6667 | 99.0712 | 5 | 1 | 6 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | * | 58.0645 | 40.9091 | 100.0000 | 99.0712 | 9 | 13 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 99.0712 | 3 | 2 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 99.0712 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 99.0741 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.0759 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0826 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 99.0826 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.0826 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.0826 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.0826 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0826 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0826 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | * | 97.5579 | 97.2789 | 97.8385 | 99.0840 | 858 | 24 | 860 | 19 | 7 | 36.8421 | |
| qzeng-custom | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 99.0888 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 75.0000 | 99.0888 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | * | 58.0645 | 40.9091 | 100.0000 | 99.0891 | 9 | 13 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.0895 | 6 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 99.0909 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 99.0909 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | * | 73.8916 | 64.1026 | 87.2093 | 99.0927 | 50 | 28 | 75 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 85.7732 | 78.7879 | 94.1176 | 99.0950 | 26 | 7 | 32 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.0964 | 6 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0991 | 1 | 0 | 1 | 0 | 0 | ||