PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
73351-73400 / 86044 show all
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.0596
90900
jli-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
88.8889
100.0000
80.0000
99.0602
40410
0.0000
ciseli-customINDELI1_5map_l250_m0_e0het
37.0370
33.3333
41.6667
99.0603
510574
57.1429
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.0610
20200
anovak-vgINDELC1_5segdup*
0.0000
0.0000
60.0000
99.0619
00320
0.0000
ckim-gatkINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.0654
11100
ckim-dragenINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.0654
10100
ciseli-customINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
0.0000
99.0654
00010
0.0000
ckim-vqsrINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.0654
11100
hfeng-pmm3INDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
99.0654
00010
0.0000
jlack-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0654
20200
gduggal-bwavardINDELC16_PLUSsegduphet
0.0000
0.0000
99.0654
00020
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
99.0654
00010
0.0000
gduggal-bwaplatINDELI1_5map_l250_m2_e1het
63.9175
46.9697
100.0000
99.0657
31353100
gduggal-bwaplatSNPtvmap_l250_m0_e0*
38.0148
23.5294
98.9011
99.0675
18058518020
0.0000
ndellapenna-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0698
20200
asubramanian-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.0698
20200
qzeng-customINDELD16_PLUSmap_l150_m0_e0homalt
0.0000
0.0000
20.0000
99.0706
00140
0.0000
ltrigg-rtg1INDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
100.0000
99.0706
00500
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
74.0741
83.3333
66.6667
99.0712
51633
100.0000
gduggal-bwaplatINDELD6_15map_l250_m2_e0*
58.0645
40.9091
100.0000
99.0712
913900
jlack-gatkINDELI6_15map_l250_m2_e1het
75.0000
60.0000
100.0000
99.0712
32300
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
80.0000
100.0000
66.6667
99.0712
40420
0.0000
gduggal-bwaplatINDELD6_15map_l250_m1_e0*
61.5385
44.4444
100.0000
99.0730
810800
ltrigg-rtg1INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
50.0000
99.0741
00111
100.0000
ltrigg-rtg1INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
96.2963
100.0000
92.8571
99.0759
1201310
0.0000
jmaeng-gatkINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.0826
10100
ciseli-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
99.0826
00010
0.0000
hfeng-pmm2INDELI6_15map_l250_m0_e0*
0.0000
0.0000
99.0826
01011
100.0000
jlack-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
99.0826
00010
0.0000
hfeng-pmm3INDELI16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
99.0826
00010
0.0000
jli-customINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.0826
11100
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
66.6667
50.0000
100.0000
99.0826
11100
rpoplin-dv42INDEL*map_l125_m0_e0*
97.5579
97.2789
97.8385
99.0840
85824860197
36.8421
qzeng-customSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0868
20200
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.0868
1001000
ltrigg-rtg2INDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
99.0868
20200
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
81.8182
81.8182
81.8182
99.0886
92922
100.0000
ltrigg-rtg2INDELC1_5segduphomalt
0.0000
0.0000
100.0000
99.0888
00400
eyeh-varpipeINDELC1_5segduphetalt
0.0000
0.0000
75.0000
99.0888
00311
100.0000
gduggal-bwaplatINDELD6_15map_l250_m2_e1*
58.0645
40.9091
100.0000
99.0891
913900
cchapple-customINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.0895
60600
qzeng-customINDELC16_PLUSdecoy*
0.0000
0.0000
99.0909
00010
0.0000
hfeng-pmm2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
80.0000
100.0000
66.6667
99.0909
40420
0.0000
qzeng-customINDEL*map_l250_m0_e0*
73.8916
64.1026
87.2093
99.0927
502875116
54.5455
qzeng-customINDELD1_5map_l250_m0_e0het
85.7732
78.7879
94.1176
99.0950
2673222
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
92.3077
85.7143
100.0000
99.0964
61600
qzeng-customSNPtvmap_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
qzeng-customSNP*map_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
hfeng-pmm1INDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.0991
10100