PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
73251-73300 / 86044 show all
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
99.0000
10100
ckim-isaacINDELD16_PLUSmap_l250_m2_e1*
33.3333
20.0000
100.0000
99.0000
14100
ckim-isaacINDELI1_5map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
99.0000
11100
ltrigg-rtg2INDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
99.0000
30200
gduggal-bwaplatINDELD6_15map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
99.0000
11100
gduggal-bwavardINDELC6_15map_l250_m1_e0*
0.0000
0.0000
99.0000
00010
0.0000
gduggal-snapfbINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
99.0000
11100
gduggal-bwavardINDELC1_5segduphomalt
0.0000
0.0000
100.0000
99.0025
00400
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
53.3333
44.4444
66.6667
99.0050
45422
100.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e0*
62.5000
100.0000
45.4545
99.0081
50560
0.0000
mlin-fermikitINDELD16_PLUSdecoy*
92.3077
100.0000
85.7143
99.0085
60610
0.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
99.0099
10100
raldana-dualsentieonINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.0099
10100
gduggal-snapplatSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0099
20200
asubramanian-gatkINDELI6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
99.0099
12100
ckim-isaacINDELI6_15map_l250_m2_e0*
40.0000
25.0000
100.0000
99.0099
26200
eyeh-varpipeINDELC6_15map_l150_m1_e0*
0.0000
0.0000
100.0000
99.0099
00100
ciseli-customINDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
99.0099
00011
100.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
99.0148
21200
dgrover-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0148
20200
qzeng-customINDELD16_PLUSmap_l250_m2_e1*
62.5000
100.0000
45.4545
99.0152
50560
0.0000
gduggal-bwaplatINDELI1_5map_l250_m1_e0het
62.0690
45.0000
100.0000
99.0193
27332700
gduggal-bwaplatINDELI1_5map_l150_m2_e0hetalt
61.5385
44.4444
100.0000
99.0196
45400
qzeng-customINDELD16_PLUSdecoy*
62.5000
100.0000
45.4545
99.0196
60560
0.0000
hfeng-pmm2INDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.0196
10100
ciseli-customINDELI16_PLUSmap_l100_m2_e1het
0.0000
0.0000
99.0196
018010
0.0000
jmaeng-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
99.0196
00010
0.0000
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_51to200*
40.6561
26.7327
84.8485
99.0214
27742853
60.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.0217
90900
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
99.0228
00030
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
99.0228
00030
0.0000
qzeng-customINDELD6_15map_l250_m0_e0*
44.4444
33.3333
66.6667
99.0244
24421
50.0000
ltrigg-rtg2INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
99.0244
30200
bgallagher-sentieonINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0244
20200
gduggal-bwaplatINDELI1_5map_l250_m2_e0*
55.1282
38.0531
100.0000
99.0247
43704300
gduggal-bwavardINDELC1_5map_l250_m0_e0het
0.0000
0.0000
99.0260
00030
0.0000
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.0265
1101100
astatham-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0291
20200
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
99.0291
11100
eyeh-varpipeINDELC1_5map_l100_m0_e0hetalt
0.0000
0.0000
100.0000
99.0291
00100
gduggal-snapplatINDELI6_15map_l150_m0_e0*
0.0000
0.0000
99.0291
08010
0.0000
hfeng-pmm1INDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
99.0291
00010
0.0000
ciseli-customINDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
99.0291
00011
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.0305
70700
gduggal-bwaplatINDELI1_5map_l250_m2_e0het
63.9175
46.9697
100.0000
99.0309
31353100
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.0319
1001000
rpoplin-dv42INDEL*map_l150_m2_e1*
97.8375
97.3593
98.3205
99.0326
14013814052412
50.0000
jlack-gatkINDELI16_PLUSmap_l125_m2_e0homalt
80.0000
66.6667
100.0000
99.0338
21200
jlack-gatkINDELI16_PLUSmap_l125_m2_e1homalt
80.0000
66.6667
100.0000
99.0338
21200
hfeng-pmm1INDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.0338
60600