PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
73201-73250 / 86044 show all
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9648
1001000
ckim-isaacINDELI1_5map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
98.9691
11100
raldana-dualsentieonINDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
98.9691
00010
0.0000
asubramanian-gatkINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.9691
00011
100.0000
asubramanian-gatkINDELI6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
98.9691
12100
ltrigg-rtg1INDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
100.0000
98.9691
00800
ltrigg-rtg1INDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.9691
30200
gduggal-bwaplatINDELD1_5map_l250_m0_e0homalt
55.5556
38.4615
100.0000
98.9691
58500
gduggal-bwaplatINDELD1_5map_l250_m2_e0het
59.3023
42.1488
100.0000
98.9699
51705100
hfeng-pmm3INDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
98.9708
60600
asubramanian-gatkSNPtimap_l250_m0_e0*
32.2936
19.2701
99.6226
98.9715
264110626411
100.0000
gduggal-snapvardINDELC1_5segdup*
0.0000
0.0000
50.0000
98.9717
0030301
3.3333
cchapple-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9729
1101100
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
54.5455
50.0000
60.0000
98.9733
22320
0.0000
gduggal-bwaplatINDELD1_5map_l250_m2_e1het
59.7701
42.6230
100.0000
98.9735
52705200
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
40.0000
100.0000
25.0000
98.9744
10131
33.3333
gduggal-bwaplatINDELD1_5map_l250_m1_e0het
57.6923
40.5405
100.0000
98.9752
45664500
gduggal-snapplatINDEL*map_l250_m0_e0*
75.6398
67.9487
85.2941
98.9759
532558100
0.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m1_e0*
57.1429
50.0000
66.6667
98.9761
22210
0.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.9796
20100
gduggal-snapvardINDELC1_5map_l250_m0_e0homalt
0.0000
0.0000
100.0000
98.9796
00100
gduggal-bwafbINDELC6_15HG002complexvarhetalt
0.0000
0.0000
98.9796
00010
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
98.9796
00020
0.0000
gduggal-bwaplatSNP*map_l125_m0_e0hetalt
20.0000
11.1111
100.0000
98.9796
18100
gduggal-bwaplatSNPtvmap_l125_m0_e0hetalt
20.0000
11.1111
100.0000
98.9796
18100
gduggal-bwavardINDELC6_15map_l250_m1_e0het
0.0000
0.0000
98.9796
00010
0.0000
eyeh-varpipeINDEL*map_l250_m0_e0*
96.3245
97.4359
95.2381
98.9802
76214074
57.1429
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
69.7674
83.3333
60.0000
98.9806
51643
75.0000
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
40.0000
100.0000
25.0000
98.9822
10131
33.3333
rpoplin-dv42INDEL*map_l150_m1_e0*
97.8620
97.3842
98.3446
98.9844
13033513072210
45.4545
anovak-vgINDELD16_PLUSdecoyhet
66.6667
50.0000
100.0000
98.9848
22200
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
98.9865
21211
100.0000
raldana-dualsentieonINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
98.9873
40400
ckim-gatkINDELI1_5map_l250_m0_e0het
81.2500
86.6667
76.4706
98.9875
1321340
0.0000
ckim-vqsrINDELI1_5map_l250_m0_e0het
81.2500
86.6667
76.4706
98.9875
1321340
0.0000
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_diTR_51to200het
30.0000
35.2941
26.0870
98.9890
6116170
0.0000
hfeng-pmm1INDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
98.9899
00010
0.0000
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.9899
21100
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
98.9899
10100
asubramanian-gatkINDELC1_5segdup*
0.0000
0.0000
98.9899
00010
0.0000
gduggal-bwaplatINDELD6_15map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
98.9899
11100
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
98.9899
03021
50.0000
ciseli-customINDELI16_PLUSmap_l100_m2_e0het
0.0000
0.0000
98.9899
018010
0.0000
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9899
1101100
gduggal-bwaplatINDELI1_5map_l250_m1_e0*
52.7778
35.8491
100.0000
98.9928
38683800
ltrigg-rtg1INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.9950
30200
hfeng-pmm3INDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
98.9950
40400
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
54.5455
50.0000
60.0000
98.9980
22320
0.0000
raldana-dualsentieonINDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
99.0000
00010
0.0000
jli-customINDELI6_15map_l250_m0_e0*
0.0000
0.0000
99.0000
01011
100.0000