PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
73051-73100 / 86044 show all
ltrigg-rtg2INDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.8636
30200
ciseli-customINDELC16_PLUSmap_sirenhomalt
0.0000
0.0000
98.8636
00010
0.0000
ndellapenna-hhgaINDELC1_5**
46.1538
30.0000
100.0000
98.8636
37100
jlack-gatkINDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.8636
10110
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
98.8636
00021
50.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8636
10100
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8695
1101100
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_51to200*
40.4040
47.6190
35.0877
98.8711
202220370
0.0000
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8718
1101100
astatham-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8718
1101100
gduggal-bwaplatINDEL*map_l250_m1_e0*
56.4706
39.3443
100.0000
98.8721
12018512000
gduggal-bwaplatINDEL*map_l250_m2_e0*
58.5470
41.3897
100.0000
98.8731
13719413700
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8741
1101100
asubramanian-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
98.8764
10100
ckim-vqsrINDELI16_PLUSmap_l250_m2_e0het
66.6667
100.0000
50.0000
98.8764
10110
0.0000
eyeh-varpipeINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.8764
12200
ckim-gatkINDELI16_PLUSmap_l250_m2_e0het
66.6667
100.0000
50.0000
98.8764
10110
0.0000
gduggal-bwaplatINDELI1_5map_l150_m1_e0hetalt
61.5385
44.4444
100.0000
98.8764
45400
gduggal-snapfbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
98.8764
00011
100.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
0.0000
0.0000
98.8764
00010
0.0000
hfeng-pmm3SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8764
20200
ltrigg-rtg1INDELC6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
98.8764
00011
100.0000
gduggal-bwaplatINDELD16_PLUSmap_l250_m2_e0*
75.0000
60.0000
100.0000
98.8806
32300
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
98.8806
20210
0.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m2_e0*
66.6667
60.0000
75.0000
98.8827
32310
0.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
98.8848
21211
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8854
70700
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8854
70700
gduggal-bwaplatINDEL*map_l250_m2_e1*
58.8983
41.7417
100.0000
98.8871
13919413900
gduggal-bwafbINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
98.8889
10110
0.0000
gduggal-snapplatINDELI6_15map_l250_m2_e1het
0.0000
0.0000
98.8889
05010
0.0000
asubramanian-gatkINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
98.8889
10100
astatham-gatkINDELI16_PLUSmap_l250_m0_e0homalt
0.0000
0.0000
98.8889
00010
0.0000
bgallagher-sentieonINDELI16_PLUSmap_l250_m0_e0homalt
0.0000
0.0000
98.8889
00010
0.0000
dgrover-gatkINDELI16_PLUSmap_l250_m0_e0homalt
0.0000
0.0000
98.8889
00010
0.0000
ltrigg-rtg1INDELC1_5map_l125_m0_e0het
0.0000
0.0000
100.0000
98.8889
00100
hfeng-pmm1SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8889
20200
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
60.0000
75.0000
50.0000
98.8909
31330
0.0000
bgallagher-sentieonINDELI16_PLUSmap_l250_m2_e0*
50.0000
100.0000
33.3333
98.8930
10120
0.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m2_e0het
66.6667
66.6667
66.6667
98.8930
21210
0.0000
gduggal-snapplatINDELI1_5map_l125_m2_e0hetalt
51.5337
36.8421
85.7143
98.8942
712611
100.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m2_e1*
66.6667
60.0000
75.0000
98.8950
32310
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
98.8950
00020
0.0000
gduggal-bwavardINDELC6_15map_l150_m2_e0het
0.0000
0.0000
98.8950
00020
0.0000
ltrigg-rtg2INDELC1_5map_l150_m1_e0het
0.0000
0.0000
100.0000
98.8950
00200
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8962
1001000
gduggal-bwaplatINDELD16_PLUSmap_l250_m2_e1*
75.0000
60.0000
100.0000
98.8971
32300
ghariani-varprowlINDELD16_PLUSmap_l150_m0_e0het
93.3333
100.0000
87.5000
98.8981
70710
0.0000
jmaeng-gatkINDELI1_5map_l250_m0_e0*
89.3617
87.5000
91.3043
98.8990
2132121
50.0000
dgrover-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9000
1101100