PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
72901-72950 / 86044 show all
ltrigg-rtg1INDELC1_5map_l150_m1_e0het
0.0000
0.0000
100.0000
98.7500
00200
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7500
10100
jpowers-varprowlINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.7500
10100
ltrigg-rtg2INDELD1_5map_l150_m2_e0hetalt
83.3333
71.4286
100.0000
98.7539
52400
dgrover-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7539
80800
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
98.7544
71700
ckim-vqsrINDELD16_PLUSmap_l250_m2_e0het
85.7143
100.0000
75.0000
98.7578
30310
0.0000
bgallagher-sentieonINDELI16_PLUSmap_l250_m0_e0*
0.0000
0.0000
98.7578
00020
0.0000
anovak-vgINDELD16_PLUSdecoy*
66.6667
50.0000
100.0000
98.7603
33300
gduggal-bwaplatSNP*map_l250_m0_e0*
44.7426
28.8993
99.0369
98.7610
617151861760
0.0000
gduggal-snapplatINDELD1_5map_l250_m0_e0*
82.6230
78.2609
87.5000
98.7626
36104260
0.0000
ndellapenna-hhgaINDEL*map_l150_m2_e0*
97.7543
97.3011
98.2117
98.7639
1370381373259
36.0000
qzeng-customINDELI1_5map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
98.7654
11100
mlin-fermikitINDELD6_15map_l250_m0_e0*
0.0000
0.0000
98.7654
06010
0.0000
asubramanian-gatkINDELC16_PLUSmap_sirenhet
0.0000
0.0000
98.7654
00010
0.0000
jli-customINDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
98.7654
00010
0.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
50.0000
33.3333
100.0000
98.7654
12100
ckim-gatkSNPtimap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.7654
14100
ckim-gatkSNPtimap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.7654
14100
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200*
37.2093
50.0000
29.6296
98.7677
888190
0.0000
ltrigg-rtg2INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7685
60500
asubramanian-gatkSNPtvmap_l250_m0_e0homalt
28.4444
16.5803
100.0000
98.7688
321613200
ndellapenna-hhgaINDEL*map_l150_m2_e1*
97.6974
97.2203
98.1793
98.7700
13994014022610
38.4615
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
28.5714
25.0000
33.3333
98.7705
13122
100.0000
rpoplin-dv42INDELD16_PLUSdecoy*
90.9091
83.3333
100.0000
98.7715
51500
ndellapenna-hhgaINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7730
20200
jmaeng-gatkINDELI6_15map_l250_m2_e0het
66.6667
60.0000
75.0000
98.7730
32311
100.0000
ckim-vqsrINDELD16_PLUSmap_l250_m2_e1het
85.7143
100.0000
75.0000
98.7730
30310
0.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7730
20200
gduggal-snapvardINDELC6_15map_l125_m1_e0*
0.0000
0.0000
98.7755
00030
0.0000
jlack-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7768
80800
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
66.6667
98.7791
021477
100.0000
gduggal-bwaplatINDELD6_15map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
98.7805
11100
gduggal-bwaplatINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.7805
21200
ckim-isaacINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7805
20200
ckim-isaacINDELI1_5map_l250_m0_e0het
80.0000
66.6667
100.0000
98.7805
1051000
ckim-vqsrINDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.7805
10110
0.0000
egarrison-hhgaINDELD16_PLUSdecoyhet
85.7143
75.0000
100.0000
98.7805
31300
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.7805
12200
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.7805
11100
qzeng-customINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
98.7805
00010
0.0000
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
98.7805
10220
0.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7805
10100
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7805
70700
ckim-gatkINDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.7805
10110
0.0000
ciseli-customINDELI16_PLUSmap_l100_m1_e0het
0.0000
0.0000
98.7805
018010
0.0000
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
98.7805
00100
ciseli-customINDELC1_5segdup*
0.0000
0.0000
21.0526
98.7821
004154
26.6667
egarrison-hhgaINDEL*map_l125_m0_e0*
97.3294
97.0522
97.6082
98.7845
85626857217
33.3333
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7849
1001000