PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
72851-72900 / 86044 show all
gduggal-snapfbINDEL*map_l250_m0_e0homalt
93.6170
88.0000
100.0000
98.7254
2232200
hfeng-pmm2INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.7261
20200
eyeh-varpipeINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
100.0000
98.7261
00200
jmaeng-gatkINDELI6_15map_l250_m1_e0*
66.6667
57.1429
80.0000
98.7277
43411
100.0000
ltrigg-rtg1INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7277
60500
gduggal-bwaplatINDELD1_5map_l250_m1_e0*
58.6777
41.5205
100.0000
98.7278
711007100
hfeng-pmm1INDELI16_PLUSmap_l250_m2_e0*
50.0000
100.0000
33.3333
98.7288
10120
0.0000
dgrover-gatkINDELI1_5map_l250_m0_e0het
88.8889
80.0000
100.0000
98.7302
1231200
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
81.4815
73.3333
91.6667
98.7315
1141110
0.0000
eyeh-varpipeINDELC1_5segduphomalt
0.0000
0.0000
100.0000
98.7326
001000
gduggal-bwaplatINDELD1_5map_l250_m2_e0*
60.6061
43.4783
100.0000
98.7326
801048000
gduggal-bwaplatINDELI16_PLUSmap_l150_m2_e0het
28.5714
16.6667
100.0000
98.7342
15100
gduggal-bwaplatINDELI16_PLUSmap_l150_m2_e1het
28.5714
16.6667
100.0000
98.7342
15100
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7342
10100
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7342
10100
gduggal-snapplatINDELI1_5map_l250_m2_e1het
74.1935
69.6970
79.3103
98.7342
462046120
0.0000
bgallagher-sentieonINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.7342
00011
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.7342
12100
mlin-fermikitINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.7342
10100
qzeng-customINDELI16_PLUSsegduphetalt
66.6667
50.0000
100.0000
98.7342
22100
ltrigg-rtg2INDELC1_5map_l150_m2_e1hetalt
0.0000
0.0000
100.0000
98.7342
00100
ciseli-customINDELD16_PLUSmap_l250_m2_e1het
50.0000
33.3333
100.0000
98.7342
12100
ciseli-customINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
98.7342
00010
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e0het
66.6667
100.0000
50.0000
98.7362
30440
0.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7374
1001000
jmaeng-gatkINDEL*map_l250_m0_e0het
84.4828
92.4528
77.7778
98.7390
49449141
7.1429
gduggal-snapvardINDELC6_15map_l150_m2_e1*
0.0000
0.0000
98.7395
00030
0.0000
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
28.5714
25.0000
33.3333
98.7395
13122
100.0000
ckim-isaacINDELI6_15map_l150_m2_e1het
40.0000
25.0000
100.0000
98.7395
412300
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7402
80800
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
95.2381
90.9091
100.0000
98.7406
1011000
ndellapenna-hhgaINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7421
20200
ckim-vqsrINDELI6_15map_l250_m2_e0het
88.8889
80.0000
100.0000
98.7421
41400
gduggal-bwavardINDELC6_15map_l150_m1_e0het
0.0000
0.0000
98.7421
00020
0.0000
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7421
80800
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7421
1001000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
75.0000
98.7441
00622
100.0000
rpoplin-dv42INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7448
30300
qzeng-customINDELD16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.7461
30440
0.0000
gduggal-bwaplatINDELD1_5map_l250_m2_e1*
60.9023
43.7838
100.0000
98.7465
811048100
gduggal-bwaplatINDELI1_5map_l250_m2_e0homalt
42.1053
26.6667
100.0000
98.7487
12331200
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7500
10100
gduggal-bwavardINDELC16_PLUSmap_l150_m1_e0het
0.0000
0.0000
98.7500
00010
0.0000
gduggal-snapfbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
98.7500
00011
100.0000
rpoplin-dv42INDELI1_5map_l250_m0_e0hetalt
0.0000
0.0000
98.7500
00010
0.0000
hfeng-pmm1INDELI16_PLUSmap_l250_m2_e1*
50.0000
100.0000
33.3333
98.7500
10120
0.0000
ciseli-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
98.7500
00010
0.0000
astatham-gatkINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.7500
00011
100.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.7500
20100
jli-customSNPtisegduphetalt
100.0000
100.0000
100.0000
98.7500
20200