PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72851-72900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 98.7254 | 22 | 3 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7261 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.7261 | 0 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.7277 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7277 | 6 | 0 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | * | 58.6777 | 41.5205 | 100.0000 | 98.7278 | 71 | 100 | 71 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m2_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.7288 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7302 | 12 | 3 | 12 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.7315 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.7326 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | * | 60.6061 | 43.4783 | 100.0000 | 98.7326 | 80 | 104 | 80 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | het | 74.1935 | 69.6970 | 79.3103 | 98.7342 | 46 | 20 | 46 | 12 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7342 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | segdup | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7342 | 2 | 2 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.7342 | 0 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 98.7342 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7362 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7374 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | het | 84.4828 | 92.4528 | 77.7778 | 98.7390 | 49 | 4 | 49 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 98.7395 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7395 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | het | 40.0000 | 25.0000 | 100.0000 | 98.7395 | 4 | 12 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7402 | 8 | 0 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.7406 | 10 | 1 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 98.7421 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 10 | 0 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 98.7441 | 0 | 0 | 6 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7448 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | * | 60.9023 | 43.7838 | 100.0000 | 98.7465 | 81 | 104 | 81 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 98.7487 | 12 | 33 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.7500 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 1 | 0 | 0 | ||
| jli-custom | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 2 | 0 | 0 | ||