PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72751-72800 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.6577 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6577 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 98.6607 | 6 | 2 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.6607 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.6631 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | segdup | hetalt | 56.4516 | 41.6667 | 87.5000 | 98.6644 | 20 | 28 | 21 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6667 | 4 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.6667 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6667 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 98.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.6692 | 7 | 0 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 98.6711 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6742 | 7 | 1 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.3576 | 78.5714 | 60.4938 | 98.6745 | 33 | 9 | 49 | 32 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6755 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 98.6755 | 0 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 44.0678 | 28.2609 | 100.0000 | 98.6762 | 13 | 33 | 13 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6795 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.0000 | 46.1538 | 85.7143 | 98.6805 | 12 | 14 | 12 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | segdup | * | 97.9435 | 97.7700 | 98.1176 | 98.6833 | 2499 | 57 | 2502 | 48 | 36 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| mlin-fermikit | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6842 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6842 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6842 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.6842 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.6842 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6842 | 2 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.6842 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 98.6842 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 71.4286 | 100.0000 | 55.5556 | 98.6861 | 7 | 0 | 5 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||