PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
72701-72750 / 86044 show all
jmaeng-gatkINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.6254
43400
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
98.6264
51500
asubramanian-gatkINDELD6_15map_l250_m0_e0*
90.9091
83.3333
100.0000
98.6264
51500
anovak-vgINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
98.6301
33111
100.0000
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.6301
10100
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
98.6301
00010
0.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.6301
11100
hfeng-pmm3INDELI16_PLUSmap_l250_m0_e0homalt
0.0000
0.0000
98.6301
00010
0.0000
gduggal-snapvardINDELC6_15map_l125_m1_e0het
0.0000
0.0000
98.6301
00030
0.0000
ciseli-customINDELI16_PLUSmap_l125_m2_e0*
0.0000
0.0000
98.6301
015011
100.0000
gduggal-bwaplatINDELI16_PLUSmap_l100_m0_e0*
16.6667
9.0909
100.0000
98.6301
110100
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.6301
10100
gduggal-bwaplatINDELI1_5map_l100_m0_e0hetalt
61.5385
44.4444
100.0000
98.6301
45400
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_51to200*
23.2323
22.7723
23.7113
98.6305
237823746
8.1081
egarrison-hhgaINDEL*map_l150_m1_e0*
97.6046
97.3842
97.8261
98.6310
13033513052910
34.4828
ckim-vqsrINDELI6_15map_l250_m2_e0*
85.7143
75.0000
100.0000
98.6333
62600
ltrigg-rtg2INDELD1_5map_l150_m1_e0hetalt
83.3333
71.4286
100.0000
98.6348
52400
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
57.1429
50.0000
66.6667
98.6364
33210
0.0000
rpoplin-dv42INDEL*map_l125_m1_e0*
98.0229
97.5795
98.4704
98.6389
20565120603213
40.6250
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
50.0000
50.0000
50.0000
98.6395
11110
0.0000
qzeng-customINDELD16_PLUSmap_l125_m0_e0homalt
54.5455
100.0000
37.5000
98.6395
20350
0.0000
eyeh-varpipeINDELC6_15map_l125_m2_e0*
0.0000
0.0000
100.0000
98.6395
00200
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.6395
21200
jli-customINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6395
20200
asubramanian-gatkINDELD16_PLUSmap_l250_m1_e0het
66.6667
66.6667
66.6667
98.6425
21210
0.0000
ciseli-customINDEL*map_l250_m0_e0*
55.0520
51.2821
59.4203
98.6428
403841288
28.5714
gduggal-bwaplatINDEL*map_l150_m2_e0hetalt
64.5161
47.6190
100.0000
98.6431
10111000
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_51to200*
49.0051
33.5664
90.7407
98.6432
48954953
60.0000
gduggal-bwaplatINDELI1_5map_l250_m1_e0homalt
40.0000
25.0000
100.0000
98.6453
11331100
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
98.6460
71700
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.6486
11100
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.6486
12100
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
98.6486
00030
0.0000
gduggal-bwafbINDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
98.6486
00011
100.0000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.6486
12100
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
98.6486
00010
0.0000
rpoplin-dv42INDELI6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
98.6486
12100
raldana-dualsentieonINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6486
20200
raldana-dualsentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
50.0000
50.0000
50.0000
98.6486
11110
0.0000
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.6486
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.6486
10100
ciseli-customINDELD6_15map_l250_m0_e0het
25.0000
25.0000
25.0000
98.6486
13130
0.0000
dgrover-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
98.6486
00010
0.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m0_e0*
66.6667
100.0000
50.0000
98.6486
10110
0.0000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
100.0000
98.6486
00100
asubramanian-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
98.6486
00010
0.0000
astatham-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
98.6486
00010
0.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
98.6532
20220
0.0000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
63.9167
73.6842
56.4356
98.6567
421557440
0.0000
qzeng-customINDELD16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.6577
30440
0.0000