PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
72551-72600 / 86044 show all
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5294
10100
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.5294
10100
gduggal-bwaplatINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
50.0000
33.3333
100.0000
98.5294
12100
gduggal-bwaplatINDELI6_15map_l125_m0_e0*
50.0000
33.3333
100.0000
98.5294
510500
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
98.5294
81800
qzeng-customSNPtimap_l250_m1_e0hetalt
40.0000
25.0000
100.0000
98.5294
13100
rpoplin-dv42INDELI6_15map_l250_m1_e0homalt
50.0000
33.3333
100.0000
98.5294
12100
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
50.0000
33.3333
100.0000
98.5294
24100
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
98.5294
22100
gduggal-snapplatINDELD6_15map_l125_m2_e0hetalt
19.0476
10.5263
100.0000
98.5294
217200
ltrigg-rtg2INDELC1_5map_l150_m1_e0hetalt
0.0000
0.0000
100.0000
98.5294
00100
ckim-vqsrINDELD16_PLUSmap_l250_m0_e0het
66.6667
100.0000
50.0000
98.5294
10110
0.0000
ckim-isaacINDELI6_15map_l150_m1_e0het
33.3333
20.0000
100.0000
98.5294
312300
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.5294
20210
0.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
98.5348
22221
50.0000
gduggal-snapvardINDELC6_15map_l150_m2_e0het
0.0000
0.0000
98.5366
00030
0.0000
ckim-vqsrINDELD16_PLUSmap_l250_m2_e0*
90.9091
100.0000
83.3333
98.5366
50510
0.0000
rpoplin-dv42INDELI1_5map_l250_m2_e0hetalt
80.0000
100.0000
66.6667
98.5366
20210
0.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.5386
70700
astatham-gatkINDELI16_PLUSmap_l250_m2_e0het
66.6667
100.0000
50.0000
98.5401
10110
0.0000
hfeng-pmm1INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.5401
20200
gduggal-bwaplatINDELD6_15map_l125_m0_e0het
58.5366
41.3793
100.0000
98.5419
12171200
ckim-vqsrSNPtvmap_l250_m0_e0*
54.7664
38.3007
96.0656
98.5419
293472293120
0.0000
hfeng-pmm2INDELI1_5map_l250_m0_e0het
92.8571
86.6667
100.0000
98.5426
1321300
gduggal-bwaplatINDEL*map_l150_m2_e1hetalt
64.7059
47.8261
100.0000
98.5430
11121100
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.5437
20210
0.0000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
98.5455
20222
100.0000
asubramanian-gatkSNP*map_l250_m2_e0het
33.8604
20.4082
99.3440
98.5469
10604134106071
14.2857
asubramanian-gatkSNP*map_l250_m2_e1het
34.0104
20.5167
99.3560
98.5506
10804184108071
14.2857
astatham-gatkINDELI1_5map_l250_m0_e0het
92.8571
86.6667
100.0000
98.5507
1321300
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
98.5507
22111
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
dgrover-gatkINDELI16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.5507
10110
0.0000
ckim-vqsrINDELD16_PLUSmap_l250_m2_e1*
90.9091
100.0000
83.3333
98.5507
50510
0.0000
ckim-vqsrINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.5507
43400
ckim-isaacINDELD16_PLUSmap_l150_m0_e0*
0.0000
0.0000
98.5507
07010
0.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
ckim-gatkINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.5507
43400
gduggal-snapplatINDELD6_15map_l125_m2_e1hetalt
18.1818
10.0000
100.0000
98.5507
218200
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
jmaeng-gatkINDEL*map_l250_m2_e1hetalt
80.0000
66.6667
100.0000
98.5507
42400
ltrigg-rtg1INDELC16_PLUSmap_siren*
0.0000
0.0000
98.5507
00011
100.0000
ckim-vqsrSNPtvmap_l250_m0_e0het
60.2871
44.0559
95.4545
98.5526
252320252120
0.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
83.3333
83.3333
83.3333
98.5542
51510
0.0000
ckim-dragenINDELD16_PLUSmap_l250_m1_e0*
44.4444
50.0000
40.0000
98.5549
22231
33.3333
asubramanian-gatkSNPtvmap_l250_m2_e1*
29.3068
17.1811
99.6024
98.5560
501241550120
0.0000
jmaeng-gatkINDEL*map_l250_m0_e0*
87.9518
93.5897
82.9545
98.5586
73573152
13.3333
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
98.5597
71700
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.5597
70700
jmaeng-gatkINDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.5612
60600