PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
72051-72100 / 86044 show all
gduggal-bwavardINDELC6_15map_l125_m2_e1het
0.0000
0.0000
98.2301
00040
0.0000
ckim-gatkINDELD16_PLUSmap_l250_m1_e0*
80.0000
100.0000
66.6667
98.2301
40420
0.0000
rpoplin-dv42INDEL*map_l100_m2_e0*
97.9477
97.5088
98.3906
98.2302
36019236075927
45.7627
eyeh-varpipeINDELC1_5map_l250_m1_e0*
0.0000
0.0000
100.0000
98.2318
00900
ghariani-varprowlINDELD16_PLUSmap_l125_m1_e0*
81.4815
81.4815
81.4815
98.2330
2252252
40.0000
ckim-gatkINDELD1_5map_l150_m2_e1hetalt
76.9231
62.5000
100.0000
98.2332
53500
ckim-vqsrINDELD1_5map_l150_m2_e1hetalt
76.9231
62.5000
100.0000
98.2332
53500
ckim-vqsrINDELD1_5map_l250_m0_e0het
84.6154
100.0000
73.3333
98.2353
33033120
0.0000
jli-customSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.2353
91900
gduggal-bwaplatINDELI6_15map_l150_m1_e0het
63.6364
46.6667
100.0000
98.2368
78700
astatham-gatkINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
98.2379
40400
asubramanian-gatkSNPtimap_l250_m2_e1*
33.6335
20.2325
99.6120
98.2384
10274049102741
25.0000
ciseli-customINDELC1_5map_l150_m1_e0*
0.0000
0.0000
11.1111
98.2387
00180
0.0000
jlack-gatkINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
98.2394
51500
ckim-isaacINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
98.2405
60600
jlack-gatkINDELD16_PLUSmap_l250_m2_e1*
66.6667
80.0000
57.1429
98.2412
41431
33.3333
jlack-gatkINDELD6_15map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
98.2456
11100
hfeng-pmm1INDELI16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.2456
10110
0.0000
gduggal-bwaplatINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.2456
10100
gduggal-bwavardINDELC16_PLUSmap_l125_m0_e0het
0.0000
0.0000
98.2456
00010
0.0000
gduggal-bwavardINDELC6_15map_l150_m1_e0*
0.0000
0.0000
33.3333
98.2456
00120
0.0000
gduggal-bwavardINDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
98.2456
00011
100.0000
gduggal-bwavardINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
98.2456
11100
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.2456
10100
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.2456
10100
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
88.8889
0.0000
98.2456
81010
0.0000
ckim-vqsrINDELI6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
98.2456
40400
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
eyeh-varpipeINDELC16_PLUSsegdup*
0.0000
0.0000
100.0000
98.2456
00100
eyeh-varpipeINDELC1_5map_l100_m1_e0hetalt
0.0000
0.0000
100.0000
98.2456
00400
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
88.8889
0.0000
98.2456
81010
0.0000
ckim-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
ciseli-customINDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
98.2456
00030
0.0000
ciseli-customINDELC6_15lowcmp_SimpleRepeat_quadTR_11to50het
0.0000
0.0000
50.0000
98.2456
00110
0.0000
ciseli-customINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
98.2456
00011
100.0000
ciseli-customINDELI16_PLUSmap_l150_m2_e0*
0.0000
0.0000
98.2456
011011
100.0000
ckim-dragenINDELD16_PLUSmap_l250_m0_e0*
50.0000
100.0000
33.3333
98.2456
10120
0.0000
ckim-gatkINDELD16_PLUSmap_l250_m0_e0*
50.0000
100.0000
33.3333
98.2456
10120
0.0000
asubramanian-gatkINDELI16_PLUSmap_l125_m2_e0homalt
100.0000
100.0000
100.0000
98.2456
30300
asubramanian-gatkINDELI16_PLUSmap_l125_m2_e1homalt
100.0000
100.0000
100.0000
98.2456
30300
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.2456
10100
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
36.3636
22.2222
100.0000
98.2456
621100
ltrigg-rtg1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
98.2456
00100
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.2456
10100
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
asubramanian-gatkSNPtimap_l250_m1_e0*
32.0381
19.0871
99.6579
98.2478
874370587431
33.3333
ciseli-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
0.0000
0.0000
60.0000
98.2487
00640
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
90.0000
98.2487
00911
100.0000