PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71701-71750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.0488 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 68.9655 | 52.6316 | 100.0000 | 98.0507 | 10 | 9 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0519 | 0 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | * | 71.2329 | 56.5217 | 96.2963 | 98.0519 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.3529 | 77.7778 | 87.5000 | 98.0535 | 14 | 4 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.0545 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 98.0551 | 24 | 1 | 24 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 70.3456 | 56.1404 | 94.1748 | 98.0570 | 64 | 50 | 97 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.0583 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 83.3333 | 98.0583 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.0583 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0583 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | * | 49.0706 | 34.3750 | 85.7143 | 98.0609 | 11 | 21 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0620 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0620 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 60.0000 | 98.0620 | 0 | 0 | 6 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.0645 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0645 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.0645 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 98.0645 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0645 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.0645 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0645 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 66.1017 | 59.0909 | 75.0000 | 98.0658 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.0676 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0707 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 98.0716 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 98.0723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | * | 87.2111 | 92.7869 | 82.2674 | 98.0750 | 283 | 22 | 283 | 61 | 12 | 19.6721 | |
| gduggal-snapvard | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 1 | 0 | 1 | 0 | 0 | ||