PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71651-71700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.0263 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0263 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 98.5507 | 98.0274 | 0 | 0 | 68 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 66.1017 | 59.0909 | 75.0000 | 98.0276 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | het | 89.2857 | 94.3396 | 84.7458 | 98.0281 | 50 | 3 | 50 | 9 | 1 | 11.1111 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | * | 69.9445 | 58.1265 | 87.7944 | 98.0283 | 1241 | 894 | 1230 | 171 | 131 | 76.6082 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | * | 76.0632 | 67.8689 | 86.5079 | 98.0285 | 207 | 98 | 218 | 34 | 5 | 14.7059 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0296 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.0315 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0337 | 0 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | homalt | 55.9006 | 38.7931 | 100.0000 | 98.0358 | 45 | 71 | 45 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m0_e0 | * | 64.0900 | 47.8102 | 97.1810 | 98.0371 | 655 | 715 | 655 | 19 | 2 | 10.5263 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 98.0392 | 13 | 1 | 13 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 98.0392 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0392 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 98.0392 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 98.0392 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 98.0392 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | homalt | 62.2222 | 56.0000 | 70.0000 | 98.0411 | 14 | 11 | 14 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 55.5556 | 98.0435 | 0 | 0 | 5 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 66.2037 | 61.1111 | 72.2222 | 98.0456 | 11 | 7 | 13 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.0469 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 91.1765 | 93.9394 | 88.5714 | 98.0474 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.0488 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | * | * | 0.0000 | 0.0000 | 25.0000 | 98.0488 | 0 | 7 | 1 | 3 | 0 | 0.0000 | |