PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71601-71650 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 98.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0000 | 0 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.0000 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.0000 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 98.0000 | 56 | 4 | 56 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0000 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | segdup | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.0000 | 1 | 8 | 1 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 75.0000 | 98.0050 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | het | 54.4177 | 37.4555 | 99.4595 | 98.0055 | 736 | 1229 | 736 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.0066 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 89.8551 | 93.9394 | 86.1111 | 98.0083 | 62 | 4 | 62 | 10 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | het | 54.0541 | 37.1134 | 99.4475 | 98.0089 | 720 | 1220 | 720 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.0100 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0132 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 98.0132 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0132 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.4980 | 31.3725 | 21.4765 | 98.0147 | 32 | 70 | 32 | 117 | 5 | 4.2735 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 98.0159 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | homalt | 64.2857 | 60.0000 | 69.2308 | 98.0168 | 15 | 10 | 18 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 69.2308 | 52.9412 | 100.0000 | 98.0176 | 9 | 8 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 98.0198 | 2 | 5 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.7692 | 18.1818 | 100.0000 | 98.0198 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.7692 | 18.1818 | 100.0000 | 98.0198 | 2 | 9 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 84.8485 | 82.3529 | 87.5000 | 98.0198 | 14 | 3 | 14 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 2 | 2 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 25.4545 | 15.5556 | 70.0000 | 98.0198 | 7 | 38 | 7 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 98.0198 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 3 | 3 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 98.0198 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.0198 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.0198 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0263 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |